Thiocapsa bogorovii: LT988_20595
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Entry
LT988_20595 CDS
T07840
Name
(GenBank) DEAD/DEAH box helicase
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
tbog
Thiocapsa bogorovii
Brite
KEGG Orthology (KO) [BR:
tbog00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tbog03009
]
LT988_20595
Enzymes [BR:
tbog01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LT988_20595
Ribosome biogenesis [BR:
tbog03009
]
Prokaryotic type
rRNA helicases
LT988_20595
BRITE hierarchy
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Ortholog
Paralog
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GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UHD15629
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All DBs
Position
complement(4624176..4625573)
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AA seq
465 aa
AA seq
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MNRNFAEFLLPDALMRGLEKEGFETPTEVQAQVIPAAMEGLDLLVSAATGSGKTAAFLLP
VMERLVGAPRSDSGTRALVLVPTRELARQIHVHFTRLASYTRLNNGVITGGDSRAHQIAT
LRKNPEILVATPGRLLELLEKGEADLTDLEILVLDEADRMLDMGFVDDVLTIIGRTNPTR
QSMLFSATLHHRGLSRITERLLRDPRVLTVNPVREQHPDITHQVILSDGPEHKQQQILWL
LRNETYEKALVFTNTRDGATALGNYLIGEGQRAAVLHGELEQRERNRVVGLLHSGRVNVL
IATDVAARGLDIPGVERVINFDLPRSGDDYLHRTGRTGRAGEQGVAISLVGAAEWNRLES
IERYLNLGLERRSIEGLKASFKGPTKRSGAKKGAKKKSAAKALGAKAAAPKPKDRLRDRK
NIGKRRRPKPTAGSEVGVEAGHAPLGKRRPHQAQPEPEHGDGAKS
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgaacaggaactttgctgagtttttgcttccggacgccctcatgcgcggactggaaaaa
gagggcttcgagaccccgacggaggtccaagctcaggtgatcccggctgcgatggagggt
ctcgatctcttggtctcggccgcgacgggctcggggaaaaccgccgcctttctgctgccg
gtcatggagcgcttggtcggcgcgcctcgctccgacagcgggacgcgcgccctggtgttg
gtgccgacccgtgagctggcccgccagatccatgtgcacttcactcgcctcgccagctac
acgcgcctgaacaacggcgtgattacgggcggcgactcaagggcgcatcagatcgcgacc
ctgcgcaagaacccggagattctggtggcgacgcccggtcgcttgctcgagcttctcgag
aagggcgaggccgacctgaccgacctggagatcctggtcctcgacgaggccgaccgcatg
ctcgatatgggcttcgtcgacgatgtcctcacgatcatcggccggaccaacccgacgcgc
cagtcgatgttgttctcggcgaccctgcaccaccgaggcctgagtcgtatcaccgagcgc
ctgctgcgcgatccgcgcgtactgaccgtcaatccggtacgcgagcagcatccagacatc
acgcatcaggtcatcttgagcgacggtcccgagcacaagcagcagcagatcctctggctg
ctccgcaacgagacctacgagaaggcactggtcttcaccaacacccgcgacggtgcgacg
gcgctcggcaactatctgatcggcgagggtcaacgcgcggccgtactgcacggggagttg
gagcaacgcgagcgcaatcgtgtcgtcgggctgctgcacagcgggcgggtcaatgtcctg
atcgccaccgatgtcgcggcacgcgggctcgacatccccggtgtcgagcgagtgatcaac
ttcgacctaccgcgcagcggggacgattatctacaccgcaccgggcgtaccggccgtgcc
ggggagcagggcgtggccatctcgctggttggtgccgccgaatggaatcgactggagagc
atcgagcggtatctgaatctcggcctcgagcgtcgcagcatcgaagggctcaaggcctcc
ttcaagggtccgaccaaacgctcgggtgcgaaaaaaggggcaaaaaagaagagtgcggcc
aaggccctcggtgcgaaggccgccgcgccaaagcccaaggatcgcctgcgcgaccgcaag
aatatcggaaaaaggcgtcgccccaaaccgactgcgggaagtgaggtcggggtcgaggcc
ggtcatgcgccgctcggaaaaagacggccgcatcaagcccagcctgaacccgagcacggc
gacggggcgaaaagctga
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