KEGG   Thiocapsa bogorovii: LT988_21135
Entry
LT988_21135       CDS       T07840                                 
Name
(GenBank) HsdR family type I site-specific deoxyribonuclease
  KO
K01153  type I restriction enzyme, R subunit [EC:3.1.21.3]
Organism
tbog  Thiocapsa bogorovii
Brite
KEGG Orthology (KO) [BR:tbog00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:tbog02048]
    LT988_21135
Enzymes [BR:tbog01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     LT988_21135
Prokaryotic defense system [BR:tbog02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   LT988_21135
SSDB
Motif
Pfam: SWI2_SNF2 HSDR_N ResIII T1R_D3-like T1RH-like_C SNF2-rel_dom HSDR_N_2 DEAD OB_Dis3 Raf1_HTH
Other DBs
NCBI-ProteinID: UHD15734
LinkDB
Position
complement(4755578..4758640)
AA seq 1020 aa
MVDGVAGWEQGRGRTVHFIDWDNPQNNCFRVVNQFQVACPAGQADKHIRPDIVLFVNGIP
LVIVECKSPYAATPLEDAVDQLQRYANRRRELGLVDLSEGNEQLFHYSQFVVATCGEQAR
AGTFSSLAVHFLEWKDTSPRPIAEVAEELGQVATALTSQERLVAGMLRPAHLLDIVRHFT
LFMELGGRRVKLVCRYQQFRAVQLAIRRMLTGKTRREDGEQDRRGGIVWHTQGSGKSLTM
VFLIRKMRSDPTLRRFKVIVVTDRRDLQKQLADTAALTDEVLTIVKPERRGAKTVSSAEV
LQETLARKGKDLVFAMIQKYRGELLDADASDDTNGADEDAEDTAGRAPTKTRPFPELNTD
EDILVLVDEAHRSHTNSAHANLMQALPNCVRIGFTGTPIIMRAKGQTARIFGAFIDRYTL
RESEADGATVPIRYEGRTTGAAVKDGRALDEVFEDMLVGRTPEELEAIKQKYATKGHVME
AERLIAAKARNMLRHYVENILPNGFKAQVVAVSRRATIRYYRAFLEARDALVDELAALHP
NLLGLDDDAVNRLAPEKAFLIRAHRFLPTIAALDFAPVISGGHNDSVDPQREWSSRAKID
ARIARFKKPLFADGPNTFVGDKADPLAFLIVKSMLLTGFDAPVEQVMYLDRHIKEAELLQ
AIARVNRTYSRGGAGGGGEKSCGIVVDYYGVARHLKDALAAYSAEDVEGALESLKDEIPK
LRDRHRRALEVFLSRGIEDIAETEACVQLLKDEKLRAEFHVKLKQFLVTLDLVLPRPEGL
PFVNDAKTLAHIQARARNRYRGSERLIGKEVGEKVRKLIDDHVLSLGIDPRIPPIEITSI
QFETHVEQERSSRAKASEMEHALRYHIRKHLDEDPTHYEKLSERLRDILKEFEGRWDALA
EALKTLVEEAAQGRQRDDSTGLDPATQAFLDVLLVQLARDVTVEAETTARLREVVVELVD
HIRQEIALVGFWQRAHAREGLRGWIFQTLDDAEVLPFGRLDAVADTLMDLAKANHHRLTE
NT seq 3063 nt   +upstreamnt  +downstreamnt
gtggtcgacggcgtcgcgggctgggaacagggccgcgggcggaccgtccacttcatcgac
tgggacaacccgcagaacaactgtttccgggtcgtcaatcagttccaggtcgcctgcccg
gcgggccaggccgacaagcatatccggcccgacatcgtgctcttcgtcaacggcatcccg
ctggtgatcgtcgagtgcaagagcccctatgcagccacgccgctggaggacgcggtcgac
cagctccaacgttacgcgaaccgccgccgggagctgggcctggtggacctgagcgagggc
aacgagcagctcttccactactcccagttcgtcgtcgccacctgcggcgagcaggcacgg
gcgggcaccttctcgtcgctggcggtccactttctcgaatggaaggacaccagccccagg
cccatcgcggaggtggcggaagaactgggtcaggtcgccaccgcgctcaccagccaggaa
aggctggtcgcggggatgctgcggcccgcgcatctgctcgacatcgtgcgccacttcacc
ttgttcatggagctgggtgggcgccgggtgaaactggtctgccgctaccagcagttccgt
gccgtgcagctggccatccggcgcatgctcaccggcaagacccggcgcgaggacggcgag
caggaccgccgcggcggcatcgtctggcacacccagggcagcgggaagagcctgaccatg
gtcttcctgatccgcaagatgcgctcggacccgacgctgcgccgcttcaaggtcatcgtc
gtcaccgaccggcgggatctgcagaaacagctcgccgacaccgcggcgctgaccgacgag
gtgctgaccatcgtcaagcccgagcggcgaggcgcgaaaacggtgtcgtccgccgaggtc
ctgcaggagacgcttgcgcgcaagggcaaggatctggtcttcgcgatgatccagaagtat
cggggcgagctgctcgacgccgatgcatcggacgatacgaacggggccgacgaggacgca
gaggacacggcgggccgggcgccgaccaagacccggccattcccggagctgaacaccgac
gaggacatcctggtgctggtcgacgaggcccaccgcagccacaccaacagcgcccacgcc
aacctgatgcaggcactgcccaattgcgtgcggatcggcttcaccggcacgccgatcatc
atgcgggccaaggggcaaacggcgcggatcttcggcgccttcatcgaccgctacacgctg
cgcgagtccgaggccgacggggcgacggtgccgatccgctacgagggccgcaccaccggc
gccgcggtgaaggacgggcgtgcgctcgacgaggtcttcgaggacatgctggtgggtcgg
acgcccgaggaattggaggcgatcaagcagaagtacgcgaccaagggccatgtcatggag
gccgagcggctcatcgccgccaaggcccgcaacatgctgcgccactatgtcgagaacatc
ctgcccaacggtttcaaggcgcaagtggtagcggtcagccggcgggcgaccattcgctac
tatagggccttccttgaggcgcgggacgcgctggtcgacgaattggcggccttgcacccg
aacctgctcggtctggacgacgacgcggtgaaccggctcgccccggagaaggccttcctg
atccgggcccaccgattcctgccgaccatcgcggccctggactttgccccggtgatctcc
ggtgggcacaacgacagcgtggacccccagcgcgaatggtcgagccgcgccaagatcgat
gcccgcatcgcccgcttcaaaaagccgctgttcgcggatggtccgaataccttcgtcggc
gacaaggccgatccgctcgcctttctgatcgtcaaatcgatgctgctcaccggctttgac
gccccggtcgagcaggtgatgtatctcgaccgtcacatcaaggaggccgagctgctccag
gccatcgcccgggtgaatcgtacctattcgcgtggcggtgccggcggcgggggcgagaag
agttgcggcatcgtggtggactactacggggtggccaggcacctgaaggatgcgctggcg
gcctacagcgccgaggacgtggagggtgcgctcgagagcctgaaggacgagatccccaag
ctgcgggaccggcaccgccgggcgctggaggtgtttctctcgcgcggcatcgaggatatc
gccgagaccgaggcctgtgtgcagctcttgaaggacgagaaactgcgggccgagtttcac
gtcaagctcaagcagttcttggtcacgctggatctggtgctcccgagacccgagggcctg
cccttcgtcaacgacgccaagaccctcgcacatattcaggcgagggcccgcaaccgctac
cgcggcagcgagcggctgatcggcaaagaggtgggcgagaaggtccgcaagctgatcgac
gaccacgtcctctcactcggcatcgatccacggatcccgcccatcgaaatcacctcgatc
cagttcgaaacgcacgtcgagcaggagcgctcgtcgcgcgcaaaggccagcgagatggaa
catgccctgcgctaccacatccgcaagcacctcgacgaggaccccacgcactacgagaag
ctctcggagcgtctgcgggacattctcaaggaattcgagggccgctgggacgcgctagcc
gaggcgctcaagacgctcgtcgaggaggcggcgcagggccggcagcgcgacgacagcacc
ggcctcgatcccgcgacccaggccttcctcgacgtcctgctcgtgcagttggccagagac
gtgactgtggaggccgagaccaccgcccggctccgcgaggtggtcgtcgagttggtcgat
cacatccgtcaggagatcgcgctggtcggtttctggcaacgggctcacgcgcgcgagggg
ctgcggggttggatcttccagaccctggacgacgccgaggtcttgcccttcgggcggctg
gacgcggtggcggacacgctgatggatctggcgaaggcgaaccatcatcggctgacggag
tga

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