Thiocapsa bogorovii: LT988_21305
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Entry
LT988_21305 CDS
T07840
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
tbog
Thiocapsa bogorovii
Brite
KEGG Orthology (KO) [BR:
tbog00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tbog03019
]
LT988_21305 (hrpB)
Enzymes [BR:
tbog01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LT988_21305 (hrpB)
Messenger RNA biogenesis [BR:
tbog03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LT988_21305 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
ResIII
Motif
Other DBs
NCBI-ProteinID:
UHD15767
LinkDB
All DBs
Position
complement(4796052..4798607)
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AA seq
851 aa
AA seq
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MIPNPPRDPNPTMENLPIEPVLEDLRTALRRGHAVLQAPTGSGKSTRVPLALLDEDWLGT
GRILMLQPRRPAARMIAARMAALLGEPLGERVGYQIRFERRIGPRSRIEVITEGILTRRI
QSDPTLEGVGLLVFDEFHERSLQSDLGLALALDLVAGLRPDLRLLLMSATLDTEPLAELL
GDAAVIRGEGRSFPVEVHYADRAPGPDAVAAVISAARSALAEHSGDILAFLPGTGEINRC
VARLRERVDAQTWVLPLHGSLPTEEQEKALTPNTGSDRRVLVSTDIAETSLTIPGIRVVI
DSGLTRKPRFDPGSGLTRLVTEPIARASAEQRAGRAGRMGPGVCYRLWTRAQEQGRPESR
TPEILQTDLASLVLELRLWGVADPNELRWVDPPPGPAWESAAALLTRLGALDARGAMTPL
GRRMAELPVHPRLAAMLLDAADTARGDAADLCALITERDPLIDTPGQRRPADLGLRLQAL
HAWRERHPVPGADARRLAAADRVAQQLQRLTHNARHGPERHGSARSTAELLALAYPERIA
QRREGTDGRYRLAGGSGALLPQDDALAIHPYLVIASLDAGGADGRIQSALPIAESEIRER
FAGRITLSRRLFWDAQREAVAARAVERLESITLRAQPVPLEPTDGVAGILLEQIAARFDH
ALAWSDAALQFSARVALMRRLEPDGGWPDLSPEALRANLHTWLAPYLSGMSRLAQIQKLD
LIPILVSRLDWGQRQRLDAEAPTRIETPAGRDRPIDYGAGENPILAVQLQELFGLSETPR
IARGRVPLLLHLLSPARRPIQVTQDLAGFWARGYAEVRKELRGRYPKHAWPEDPTQATPV
AGVRRPRRAGG
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
atgattccgaacccgcctcgggacccgaacccgaccatggaaaacctgccgatcgagccc
gtgctcgaggacctccgcaccgcactgcgtcgcggacatgcggtgctccaagcgccgacc
ggctcgggcaaatcgacgcgcgttccgcttgcgttgctcgacgaagactggctcggcacc
ggccgcatcctcatgcttcaaccacgccggccggcagcacgcatgatcgccgcgcgcatg
gccgcgctcctgggcgaaccgctcggcgagcgggtcggctatcagatccgcttcgagcgc
cggatcggcccgcgcagccgcatcgaggtgatcaccgagggcatcctgacccgacgcatc
cagtccgatccgacgctcgagggggtcggactcctggtgttcgacgaattccacgagcgc
agtctgcaatcggatctgggtcttgcactcgcgctggatctggtcgccggtcttcgcccg
gatctgcggctgttgctgatgtccgcgaccctcgacaccgaaccgctggccgagctcctg
ggcgatgcggccgtcatccgcggcgagggacggagcttccccgtcgaggtccattacgct
gatcgcgcacccggtccggatgccgtcgcggcggtgatctccgccgcgcgttccgccctg
gccgagcactcgggcgacattctggcgttccttcccggcacgggcgagatcaatcgctgc
gtcgcccggctgcgcgagcgggtggatgcacagacctgggtcctgccgctgcacggcagc
ctcccgaccgaggagcaggagaaggccctgacgccgaacacaggatccgatcgccgcgtg
ctggtctccaccgatatcgccgagaccagcctgaccatcccgggtatccgggtggtgatc
gacagcggtctgacccgcaaaccgcgcttcgatccgggctccggtctcacgcgtctggtg
accgagcccatcgcgcgcgcctccgccgagcagcgcgccggacgcgccggacggatgggc
ccaggcgtgtgctaccggctctggacccgcgcacaggagcaaggccggcccgaaagccga
acgcccgagatcctccagaccgatctggcttcgcttgtcttggaactgcgcctctggggc
gtggcggatccgaacgagctgcgctgggtcgatccgccgcccggcccggcgtgggagtca
gccgcagcactcctgacgcgcctcggcgccctggatgcgcgcggcgccatgaccccgctc
ggccggcggatggcggagctgccggtccatccgcgactggccgcaatgctgctggacgcc
gccgacaccgcccggggcgatgccgccgatctatgtgcgctgatcaccgaacgcgacccg
ctgatcgacacccccgggcaacgccgccccgccgacctgggtctgcgtctacaagcgctg
cacgcctggcgcgagcgccaccccgtgccgggtgcggacgcgcggcggctcgccgcagcc
gatcgggtcgctcaacagctgcaacggctgacgcacaacgcccggcacggacctgaaagg
cacggatccgcccggtcgactgccgagctgctcgccctcgcctacccggagcgtatcgcg
cagcggcgcgagggcaccgacgggcgctatcgtctggccggcggatccggtgcgctcttg
cctcaggacgacgccttggcgattcacccctatctggtcatcgccagtctcgatgccgga
ggcgcggacggccggatccagtcggcgctccccatcgccgagtcggagatccgcgagcgc
ttcgccgggcggatcacgttgagccgccgactgttttgggacgcccaacgcgaggccgtg
gccgcccgcgccgtggagcgcctggagtccatcaccctgcgcgcgcaaccggtgcccttg
gagccgacggacggtgtcgccggcatcctgctcgagcagatcgccgcacgattcgaccac
gccctcgcctggagcgatgcggcgctccaattcagcgcccgtgtcgccctgatgcgtcga
ctcgagcccgacggcggttggccggatctctcgcccgaggcgctgcgtgcgaatctccac
acctggttggcgccctatctgagcgggatgtcccggctcgcgcagatccaaaagctcgac
ctcattccgatcctggtctcgcggctcgactggggtcagcggcaacgtctcgatgccgaa
gcaccgacccggatcgagactccggcgggccgggaccgaccgatcgactatggtgccgga
gagaacccgatcctcgccgtccaactgcaagagctcttcggtctctccgagaccccgcgc
atcgctcgcgggcgcgtcccgctgctgctgcacctgctctcgcccgcgcgtcgcccgatc
caggtcacccaagacctcgcaggcttctgggccagggggtacgccgaggtccgcaaggag
ctgcgtggacgctaccccaaacacgcctggccggaagatccgacacaagccacgcccgtc
gccggtgtgcgtcggccacgccgagccgggggctga
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