Thiocapsa bogorovii: LT988_21920
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Entry
LT988_21920 CDS
T07840
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
tbog
Thiocapsa bogorovii
Brite
KEGG Orthology (KO) [BR:
tbog00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tbog03016
]
LT988_21920
Enzymes [BR:
tbog01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LT988_21920
Transfer RNA biogenesis [BR:
tbog03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
LT988_21920
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GFIT
Motif
Pfam:
RNB
HTH_RNase_II
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
UHD15880
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Position
4927097..4928920
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AA seq
607 aa
AA seq
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MSTYQCSPPVNSLVLYKVRPARVVSVGEKIEIELDGGHKRVRPKDVALLHPGPLHRLADL
APQEGELHAAWELLEGSETNLKDLAELAFDAFTPATAWAAWQLVSEGLTFSGTPEQIQAR
PREAVERDRAEREAKAAEERDWQAFLERMAAAAPAPEDRDRLGEIERLAHGQSEHSRILA
ALGHQQTPENAHRALVQVGYWSTNHNPYPARCAVATRDPDLPVPSLIEEDRLDLTHLAAY
AIDDEGNQDPDDAISVDGDRLWVHVADVAALIDAESEIEREARARGANLYLPEGVVNMLP
AKVTDQLGLGLQPISPALSFGMLCDAHGEILDIQVHRTWVRVERLSYDWVEERLDESPFA
AMRALIEPFRARRYADGATGLDLPEVSIRVEDGQVRIRQLPRLGSRAMVTDAMLMAGVAA
GRFCLERGIPIPYASQALPEGLDVATDLASMYALRRRFKPTRLTSTPDLHAGLGLPIYTR
ATSPLRRYSDLLVHQQIRAELTGVGGLSEEEVIARVAQAELAAASVRRGERLSNQHWKHV
FLRENQEWRGDGVVVDLDERRTTLLIPELALEARVRTRDMPALNDRVRLTVTEVDVPGLT
SGFRVLG
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
ttgtcgacatatcaatgcagtccgccggtcaatagcctggtgctttacaaggttcgcccc
gcacgcgtcgtcagcgtgggggagaagatcgagatcgagctcgacggcgggcacaaacgc
gttcgaccgaaggatgtcgcgcttctgcacccgggtccactgcatcgcctggccgatctc
gcgccgcaagagggtgagctgcacgcggcctgggagttgctcgaggggtccgagaccaac
ctcaaggatcttgccgagctggcgttcgatgccttcacgccggcgacggcttgggcggcc
tggcagctggtctccgagggcctgaccttcagcggtacccccgagcagatccaagcgcgg
ccccgcgaggccgtcgagcgggatcgtgcggagcgcgaggcgaaggctgcggaggagcgc
gattggcaggcatttctcgagcgcatggccgccgctgcgccggctcccgaggatcgggac
cgactcggcgagatcgagcggctggcccacgggcaatccgagcacagtcgtatcctcgcc
gcgctgggtcatcagcaaacccccgagaatgcccatcgggccctggtacaggtcggctac
tggtccaccaatcacaatccgtatccggcacgctgcgcagtcgcgacccgagatcccgac
ctgcctgttccgtcgctgatcgaagaggatcggctcgacctgacgcaccttgcggcctac
gccatcgacgatgaaggcaatcaggatccggacgacgctatcagcgtggacggcgatcga
ctctgggtccatgtggcggacgtcgctgcgttgatcgatgccgaatccgagatcgagcgc
gaggcgagggcgcgtggagcgaacctgtatcttcccgagggcgtggtcaacatgctgccg
gcgaaggtcacggatcagctcgggctcgggctgcagccgatctccccggcgctctccttc
ggcatgctgtgcgacgcgcacggcgaaatcctggacatccaggtgcatcgcacctgggtg
cgcgtcgagcgtttgagctacgactgggtcgaagagcgcctcgatgaaagcccctttgcg
gcaatgcgggcattgatcgaaccttttcgcgcccgccgttatgccgacggtgccaccggg
ctggatctgcccgaggtgagcatccgggtcgaagatggacaggtgcggatccgtcagctc
ccgcggctcggcagccgtgccatggtgacggatgccatgctgatggccggcgtggccgcc
gggcggttttgtctggagcgcgggattccgattccctatgcgagtcaggcgctaccggaa
ggactggatgtcgccaccgatctcgcgtccatgtacgcgctgcgccgtcgcttcaagccg
actcggctaacgtctaccccggatctgcatgccgggctgggtctcccgatctatacccgg
gcgacgagtccgctacgccgttactcggaccttttggtacaccagcagatccgcgccgag
ctgaccggcgtgggcggcctgtcggaagaggaggtcatcgcacgggtggcgcaggccgag
cttgctgcagcgtccgttcgacgcggcgaacggctttccaatcagcactggaaacacgtc
ttcctgcgcgagaaccaggagtggcgaggcgacggcgttgtcgtcgatctcgacgagcga
cgcacgacgttgctgatcccggagttggcgctcgaggcgcgagtgcgcacgcgcgacatg
ccggctctgaacgatcgagtgcgcctcacggtcaccgaggtcgatgttcccgggctgacg
tcgggatttcgtgtgctcggctga
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