Trypanosoma brucei brucei: Tb10.6k15.2130
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Entry
Tb10.6k15.2130 CDS
T01013
Name
(RefSeq) ribonuclease, putative
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
tbr
Trypanosoma brucei brucei
Pathway
tbr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tbr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Tb10.6k15.2130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tbr03019
]
Tb10.6k15.2130
Enzymes [BR:
tbr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
Tb10.6k15.2130
Messenger RNA biogenesis [BR:
tbr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
Tb10.6k15.2130
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
3662359
NCBI-ProteinID:
XP_823070
UniProt:
Q38AC8
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All DBs
Position
10:2043955..2045484
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AA seq
509 aa
AA seq
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MDVDKYNCSVVFDDFKVSIEQCDFYALDQEMTGVDNGERPQSGTMSLTELYQVSRDVVNR
YIAFQLGVTVFKRVDGGYEVKPYNFYLLKSVGDFVVNIESLKFLADNHMDFQRWLVTGMP
YCGKVDTGLRGDEGGSVSSLRRGLSEYLVSRIKKWYNSPLARDGECITFKTVICEEIERL
TLSKLKEEQVFVSFEYDKSRCIGSPVSLTVHRGTSHFASGQGKEKATPDLEPIKVCGFQH
FWKCLTDCKKPIVGHNFWLDIMFMVQMHEGPLPEDYDTYKRLVHQLFPCVYDTKTLGREV
IINNLSESFCLKDLYDRCLASRLKLGGAPEFFFPPGFGRYDPDSLESECKAHEAGYDSYM
TGVAFSICRDLYCSGENSTLDKWRNIVSVYGSNYYMNVNGKDSLRRSATFVVEFREEIEY
PFGELLLCRDDAFTNVDRDVELLPRDCIISYDNKGLCRTIIVVFEDDISEDEVQTRIANS
ARRWSEVTKEANAYNIVFPEILSVYRLSG
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atggacgtcgacaaatataactgttccgttgtttttgatgattttaaggtttccatcgag
caatgtgatttttatgcgcttgatcaggagatgaccggtgtcgataacggtgagcgaccg
cagtcaggaacaatgagtttgacagagctttaccaagtttcgcgggacgttgtcaaccgg
tacattgccttccagctaggtgtaacagttttcaagcgtgttgatggcggatatgaggtt
aaaccatacaacttttatttattgaaaagtgtgggcgattttgttgtgaatattgagtca
ctgaagttcttggcagacaaccacatggattttcagcggtggttggtgacaggcatgccg
tattgtggtaaagtggacacagggttgcgtggtgatgaaggaggttctgtgtctagttta
aggagagggttgtccgaataccttgttagtcgaataaaaaagtggtataacagcccgttg
gcacgggatggcgagtgtattactttcaaaactgtaatatgcgaagaaatagagcggttg
actttatcaaagcttaaagaagaacaagttttcgtttcatttgagtatgataagtcgaga
tgcattggatcaccggtgtcgttgacagttcaccgtggaacgagtcatttcgccagcggc
caaggtaaggaaaaggccacacctgatttagagccgatcaaagtatgtgggtttcaacat
ttttggaagtgcttaaccgattgcaagaaacctattgttggccacaatttttggcttgac
attatgtttatggttcaaatgcacgaagggcctctccccgaagattatgatacttacaag
agactcgttcaccaactgttcccgtgcgtatacgatacgaaaacactcggccgcgaggtg
ataattaacaacttatctgagtctttttgtctgaaagatttgtacgacagatgcctggcc
tcgaggctaaaattgggaggggcaccagagttctttttcccaccaggatttggtcggtac
gacccagacagccttgaaagtgaatgcaaagcccatgaagctgggtacgattcatacatg
acgggcgtggctttttccatttgtagggatttgtactgtagcggtgaaaattctaccttg
gataagtggcgaaacattgtttctgtctacggcagcaattactatatgaatgtcaatggc
aaggatagtttgaggaggtctgcaacgtttgtggtggagtttagggaggagattgagtat
ccttttggagagttgcttctgtgtcgggacgatgcattcacaaatgtggatagggacgtg
gagttattaccgagggactgtattatatcatatgacaacaaaggattatgcaggacgata
atagttgtgttcgaagatgatattagcgaagacgaggtacaaacgcgcattgcgaattcg
gcgcgccgttggagtgaggttactaaggaggcaaatgcttataatatagtatttcccgaa
atactaagtgtttaccgtcttagtgggtag
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