Trypanosoma brucei brucei: Tb10.70.3290
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Entry
Tb10.70.3290 CDS
T01013
Name
(RefSeq) ATP-dependent DEAD-box RNA helicase, putative
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
tbr
Trypanosoma brucei brucei
Pathway
tbr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tbr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Tb10.70.3290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tbr03019
]
Tb10.70.3290
03036 Chromosome and associated proteins [BR:
tbr03036
]
Tb10.70.3290
Enzymes [BR:
tbr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Tb10.70.3290
Messenger RNA biogenesis [BR:
tbr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
Tb10.70.3290
mRNA degradation factors
5'-3' decay
Decapping complex
Tb10.70.3290
Chromosome and associated proteins [BR:
tbr03036
]
Eukaryotic type
Gene silencing
piRNA pathway
Tb10.70.3290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_19
ERCC3_RAD25_C
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
3663052
NCBI-ProteinID:
XP_822647
UniProt:
Q38BK1
LinkDB
All DBs
Position
10:complement(1055378..1056598)
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AA seq
406 aa
AA seq
DB search
MVTDDDWREGLKAPTKDVRKKTEDVESRRNVTFEEYGLRRELQMGIFEKGFERPSPVQEE
AIPVALQGKDVLARAKNGTGKTASFVIPVLEKVDTQLPHIQALLMVPTRELALQTAQVTK
ELGKHITGLEVMVTTGGTTLRDDILRLQSVVHVLVATPGRAVDLASKGTAKLDHCRIIVL
DEADKLLSQEFTSLMRDLYGFLPKGRQSLLFSATFPVTVKDFADKYLRNPYEINLMEELT
LRGVTQYYAFVEERQKIHCLNTLFNRLQINQSIIFCNSVNRVELLAKKITQLGYSCYYIH
ARMQQQHRNRVFHDFREGHCRNLVCSDLITRGIDIQAVNVVINFDFPKYAETYLHRIGRS
GRFGHLGLAINFVTYEDRHNVYRIEQELDTEIKPIPAEVDPELYTA
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atggtaaccgatgatgattggagggaaggtttgaaagcgccaactaaagatgtgcgaaag
aagacagaagacgtggagtctcggcgtaatgttacctttgaggagtatgggctccgacgt
gagctccagatgggtatcttcgagaagggcttcgaacggcccagtccggtgcaggaggag
gccattcctgtggccctgcagggaaaagatgtgctagcacgtgccaaaaacggcacggga
aaaacggcttccttcgtcattcccgtattggagaaggtcgacacgcagttgcctcatatc
caggcgctcctcatggttcccactcgcgaactcgcgctacagacggctcaggtgacaaaa
gagcttggcaagcacatcaccgggttggaggttatggtcacaactggtggaacaacactc
cgtgatgatattttgcgcctgcagagtgtggtgcacgtgcttgtggccacacctgggcgt
gcggtggatctcgctagtaaagggacggcgaaactcgatcactgccgtattattgttctt
gacgaggctgacaagctgttgtcgcaggagttcacgagtcttatgagggatctctacggt
ttcttacccaaaggtcgtcagtcgttgctcttttcagctacgttccccgtcacagtcaag
gactttgcggacaagtatctgcgcaacccttacgaaatcaatctcatggaggagctgacg
ctgcgtggtgtgacacagtactacgcattcgtcgaagagcgacaaaaaattcactgcctt
aacacacttttcaaccgtctgcagatcaatcaatctattattttctgcaatagcgtcaac
cgtgtggaattactggcaaagaaaatcactcagcttgggtatagctgctactacattcat
gcgcgcatgcagcagcaacatcgaaaccgtgtctttcacgactttcgtgagggccactgc
cgtaacctggtttgctctgatttgattactcgcggtatcgacattcaggctgtgaatgtg
gtgatcaacttcgacttccccaaatacgcggagacttaccttcaccgcattggccgatct
ggccgtttcggtcacttgggactcgccattaacttcgtgacttatgaagaccgccataat
gtctatcgcattgagcaggaactcgacacggaaatcaaaccgatccctgctgaagtcgat
cctgagctgtacaccgcgtaa
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