Trypanosoma brucei brucei: Tb10.70.7730
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Entry
Tb10.70.7730 CDS
T01013
Name
(RefSeq) ATP-dependent DEAD/H RNA helicase, putative
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
tbr
Trypanosoma brucei brucei
Pathway
tbr03013
Nucleocytoplasmic transport
tbr03015
mRNA surveillance pathway
tbr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tbr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Tb10.70.7730
09122 Translation
03013 Nucleocytoplasmic transport
Tb10.70.7730
03015 mRNA surveillance pathway
Tb10.70.7730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tbr03019
]
Tb10.70.7730
03041 Spliceosome [BR:
tbr03041
]
Tb10.70.7730
Enzymes [BR:
tbr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Tb10.70.7730
Messenger RNA biogenesis [BR:
tbr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
Tb10.70.7730
Spliceosome [BR:
tbr03041
]
Complex C
Other components
EJC/TREX
Tb10.70.7730
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
Tb10.70.7730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
CMS1
PEP_mutase
Motif
Other DBs
NCBI-GeneID:
3663119
NCBI-ProteinID:
XP_822312
UniProt:
Q38CI6
LinkDB
All DBs
Position
10:139933..141243
Genome browser
AA seq
436 aa
AA seq
DB search
MSSGLADFDGDDVRAPVVAAQPHIGVGLGTHSAVALGGFQDFCLKSELANAIRENGFEHP
SEVQHQALPQAMLGADILAQAKSGMGKTAVFVFALLEQVEKPTDGQRPFCQAIVIAHARE
LAYQIEQEFKRFNKYLPHCTTGVFFGGVPEDENIKQLKKEVPAIVVATPGRICSLIERKA
LDVSRVKWFVVDEFDRCLEDVKMRRDVQTAFLKTPKEKQVMMFSATMTEELRNVAKKFMS
NPTEIYVDQRSKLTLHGLAQYYINVTEAQKLRKLCDILDAVEFNQVIIFTSTVERCEALS
RQLQALKFPSKAIHSRMEQAERLVVYESCKTNQARIIVATDIFGRGVDIDRINLVVQFDM
ASDADSYLHRVGRAGRFGTKGLTVAFLTEEEKEIKRENRKYTDQGIMKEVQERFEMQVQE
LTDIATQLNQSQYMNQ
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgagtagtggtctcgctgactttgacggagatgatgtgcgggcgccagttgtggctgcg
caaccgcatattggtgttggtctcggaacccacagtgccgttgctctcggcggtttccaa
gatttttgtctcaaaagtgaactcgccaacgccattcgagaaaacggcttcgaacatccc
agtgaagtgcagcatcaggcccttccacaagccatgctcggtgcagatatccttgcacag
gcaaagtctggtatgggtaaaacagccgtgtttgtgtttgctttattggagcaagtggaa
aaaccaacggatgggcagcggcccttctgtcaagccatcgtcattgcccatgcacgcgag
ttggcatatcaaattgagcaggagttcaagcgtttcaacaaatacttgccgcattgtacc
actggtgtcttctttgggggcgtccctgaagacgagaacataaaacaactcaagaaggag
gttcccgcaatagtggtggccacaccaggtcgaatttgttccctcattgagcgaaaagct
ctcgacgtgtcgcgtgttaagtggtttgttgttgatgaattcgatcgctgcctagaggat
gtgaaaatgcgtcgcgatgtgcagacggcattccttaagacaccgaaggaaaaacaggtg
atgatgttctcagccaccatgacggaggagctgcggaatgtggcgaagaaatttatgtcg
aaccccactgaaatctacgttgaccagcgttccaagcttacacttcacgggttggcgcaa
tattacatcaatgtgacggaggcacagaaacttcgtaagttgtgcgacatcctcgacgct
gttgagttcaatcaagtcattatattcacttccactgttgagcgctgtgaggctctcagc
cgtcagctgcaggctcttaagtttccctccaaggcgattcactctcgcatggagcaggcg
gagcggttggttgtgtatgagagctgcaaaacaaaccaagctcgtatcatcgtcgccaca
gacatctttggccgtggtgtggatattgaccgtattaatcttgttgtacagtttgatatg
gcgtctgatgctgactcgtaccttcatcgtgttggtcgtgctggtcgctttggtacgaag
ggacttacggtggcattcctcactgaagaggaaaaggaaattaagcgtgagaaccgtaaa
tatactgaccagggtatcatgaaggaagtgcaggagcgatttgagatgcaggtccaggaa
cttactgacatcgccacacaactgaaccagagccagtatatgaaccaatag
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