Trypanosoma brucei brucei: Tb11.01.5535
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Entry
Tb11.01.5535 CDS
T01013
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4p
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
tbr
Trypanosoma brucei brucei
Pathway
tbr03018
RNA degradation
tbr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tbr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Tb11.01.5535
09123 Folding, sorting and degradation
03018 RNA degradation
Tb11.01.5535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tbr03019
]
Tb11.01.5535
03041 Spliceosome [BR:
tbr03041
]
Tb11.01.5535
Messenger RNA biogenesis [BR:
tbr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
Tb11.01.5535
mRNA degradation factors
5'-3' decay
Lsm complex
Tb11.01.5535
Spliceosome [BR:
tbr03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
Tb11.01.5535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
HrpE
Motif
Other DBs
NCBI-GeneID:
3665160
NCBI-ProteinID:
XP_829452
UniProt:
Q382E1
LinkDB
All DBs
Position
11
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AA seq
127 aa
AA seq
DB search
MSVRKPITPLDVLRNCRAKVVSVELAGGETINGTVVRVDRAMNMVLKQCIRTSADGEAFW
RSRESLIRGASVRNVRMDERAVIIADAQLREVTSKSKNKNRVKAKSNDKQQGERKATLSG
EKRNRGK
NT seq
384 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttaggaagcctataacgccgttggatgttcttcgcaactgtcgcgccaaagta
gtttctgttgagctggcgggcggtgaaaccatcaatggcacggttgtgcgcgtggaccgg
gcgatgaatatggttttgaagcagtgcattcggacatcagctgatggtgaagcgttttgg
cgctcacgtgagtccctcatccgcggtgcgagtgttagaaacgttcgtatggatgaacgg
gctgtgataattgcggatgctcagcttcgtgaggtcacaagcaagagcaagaacaagaac
agggtcaaggctaagagcaacgataagcagcagggggaaaggaaagctacgttgagcggt
gaaaagcgtaaccgcgggaagtaa
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