Trypanosoma brucei brucei: Tb11.03.0910
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Entry
Tb11.03.0910 CDS
T01013
Name
(RefSeq) cleavage and polyadenylation specificity factor, putative
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
tbr
Trypanosoma brucei brucei
Pathway
tbr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tbr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
Tb11.03.0910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tbr03019
]
Tb11.03.0910
Messenger RNA biogenesis [BR:
tbr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
Tb11.03.0910
U7-dependent histone pre-mRNA processing factors
Tb11.03.0910
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Gene cluster
GFIT
Motif
Pfam:
CPSF100_C
Lactamase_B_6
Beta-Casp
U_exon
Motif
Other DBs
NCBI-GeneID:
3665626
NCBI-ProteinID:
XP_828115
UniProt:
Q387M8
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Position
11
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AA seq
818 aa
AA seq
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MLRASAGSIKLTNIYGAPSGDAYHPSIPMAYLLEIDGVRILMDCGWNDGFETSYLDALLP
YLGDLHAVLFSTPELSSCGALPFVMEHITAETHVAAAGATAKMGLHGLLHPFLYLFPNTN
TWKLQSGVEFEMTVDKIYSAFRSVREPYGGKVTIRHRDVEVECFPVFSGRMLGGCGWLIK
YQIDELFYCPDFSLKPSYALNRFAPPTTATLLFIDGSPFHLLGNSGKKYEEQLNVFIREV
LSTLRNGKDVLVPVSVPGRGLEVLTIIMHLLTEKGGDNYSIVLASVQAAEVIGKASTMTE
SLKDEVILSEHQLFANVITCKTAQEVMSVAGPKVCLADGETLDYGVAADLLEYFLQGSDE
DREHLIVFPWTPKRDTTAFSVAAAAKGDAIKVQYTRRIPLSKEELEEYYLRLELELEEQR
RALDGGAYEVAPLEDIASDSGDDGDEKQNGDAAQGSGGGAQKVQQCTPGLVLPSYMSFVS
KHLQFPILETVGSLSSAVLKKMDCSYGLPIGDEMQALMRRKAPARIYSDEGPDNVQLHND
AQVEANIPSKTMVVDAVRIKNVRVFITDLSGFADAGTIRSLLKSRFTFAKKIVMIRGTTD
DHHSMTQFCRSEKVMKCGENVFVPRPLGTHLELATHVYSYVVQLDPQLANALPSALRRVK
ETRSNGFWDVGWVEGSLVRAVVYKEKDEEKEEDDHEELHPSQRRRTEGGTSTEMRDSVYT
LTALSSDKAQQCAREREMRGLQRGLYYLGETDLHKLRDAARNEQGIRGEFHKSAPMLIFD
NGVCLRKSVSGNVSLSSMVSPSVFGLRKTVYKHFSQVL
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgcgcttcggctggttcgatcaaactaacaaatatatatggggccccatctggc
gatgcgtatcacccgagcataccaatggcatacctactggagatagatggtgtgcgaatt
cttatggactgtgggtggaatgatggattcgaaaccagttaccttgatgcccttttacct
taccttggcgatctccatgcagttcttttttccacgccagaactcagcagttgcggcgca
cttccttttgtgatggagcatataacagcggaaacacacgttgctgccgctggggctaca
gcgaaaatgggacttcatggcttgctgcatccctttctttatctttttcctaacactaat
acatggaaacttcagtctggagtggagttcgaaatgacagtggacaaaatatatagtgca
tttcgtagtgtacgggaaccatatggtggtaaggtaaccatccgtcatcgagatgttgaa
gtggagtgtttccccgttttttccggacggatgcttggcggttgcggatggctcataaaa
tatcaaattgatgagttgttttattgccctgacttttccttgaagccctcgtacgcactt
aatcggttcgcaccgccaacgacggcaacacttttgtttatagacggctcaccgtttcat
ttactcggtaattctggaaaaaaatacgaggagcagcttaatgtgttcatccgggaggtg
ctaagcacgcttcgtaatgggaaggatgtactggttcctgtctctgtacctggaagaggg
ttggaagtgctaacaataatcatgcatctccttaccgagaagggaggagataactattca
attgttctcgcttccgttcaagcggccgaggtgattgggaaagcaagcacgatgacggag
tctttaaaagatgaagtgattttaagtgagcatcaactctttgcaaatgtgattacgtgc
aaaacggcacaggaggtaatgagtgtagcgggaccaaaggtgtgtcttgccgatggggaa
acgttggactatggtgtagcggctgatctcctggagtattttctacaaggtagtgatgag
gatcgggagcatcttattgtatttccgtggacacccaagcgggatacaactgcgttttcc
gtagccgcagcagcgaagggagatgccattaaggtgcagtacaccagaaggatcccacta
agtaaagaggaacttgaggagtattatctaagacttgaattggagttggaagagcagcgg
agggctttggatggaggagcgtatgaagtggctccacttgaggatatcgccagcgatagc
ggtgatgacggcgatgagaagcaaaatggagatgctgcacaaggaagtggaggaggggcg
cagaaggtacaacagtgtacgccgggacttgtgcttcctagttacatgagtttcgtatct
aaacatcttcagtttcctattctcgaaacagttggttcgcttagcagtgctgttttgaag
aagatggactgctcctatggtttgcccataggtgacgaaatgcaggccctcatgcgccga
aaagcacccgcgcgtatttacagtgatgaaggtcctgataacgtgcagttacacaacgac
gcacaagttgaggcgaacattccatcgaaaacaatggtcgtcgacgcagttcgcataaaa
aatgttcgtgttttcattaccgacctctcaggttttgcagatgctgggacgatacgcagt
ttgctaaagtctcgttttacctttgcaaagaaaatagtgatgatacgcggcactactgat
gatcatcattccatgacccagttttgtcggtccgagaaggtaatgaagtgtggagaaaac
gttttcgtcccacgtccgttggggactcatttggagctggcgacacatgtttactcgtat
gttgtccagttggatccgcagcttgccaacgcacttccgtcggcgctgcgtcgtgttaag
gagacacggtcgaatgggttttgggatgttggttgggtggaaggttcactcgtgcgtgca
gttgtgtataaagagaaggatgaggagaaggaggaagatgatcatgaagaactgcacccc
tcacagcgccgtcggacggagggcggtacatcgaccgaaatgcgtgacagcgtttatacg
cttacggcgctttcaagtgacaaggctcagcaatgcgcccgtgagcgtgagatgagggga
ttgcagcggggtttgtactatcttggggaaaccgacctccataagttgcgtgatgctgct
cgtaatgaacaagggattaggggtgagtttcacaagagtgctcccatgctcatttttgac
aacggcgtttgtcttcgcaagagtgtgagcggaaatgtatcgttgtcttcaatggtgtca
ccttccgtcttcggactcaggaaaacagtttacaagcacttttctcaagttctgtga
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