Trypanosoma brucei brucei: Tb927.3.2600
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Entry
Tb927.3.2600 CDS
T01013
Name
(RefSeq) ATP-dependent DEAD/H RNA helicase, putative
KO
K20103
ATP-dependent RNA helicase DDX60 [EC:
5.6.2.7
]
Organism
tbr
Trypanosoma brucei brucei
Brite
KEGG Orthology (KO) [BR:
tbr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tbr03019
]
Tb927.3.2600
Enzymes [BR:
tbr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Tb927.3.2600
Messenger RNA biogenesis [BR:
tbr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
Tb927.3.2600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
PIN-like_DDX60
ResIII
Helicase_C
PRTase_3
Motif
Other DBs
NCBI-GeneID:
3656197
NCBI-ProteinID:
XP_843853
UniProt:
Q582X2
LinkDB
All DBs
Position
3:complement(652522..659034)
Genome browser
AA seq
2170 aa
AA seq
DB search
MATQQRDLNLLFGNCLKDDDFLKIPMDTVGALQAIFEAKNIPIQEEADASYEGKIAQVAR
RRSALSRVCDAVLSAFRNGGKPPAGGIVGTLKHEEEERNAWKFLVAAVQKDGKMRAVIEE
ELLRTAVEHHYATARPELCDMFAHLAATEMFFIDGDSLFMSALSPPNVDWDLIQPLHVMY
NAQKLLFDMECRGARFHIVFFDSMLWMWERAPAKMLMRENLRLALTAASECPGGSRFTVR
TFPSFHSEAFETYLKEWEPEFIFMSDGEQLGSLNPLQEFFVNPEVETTNASSGVNSSGAV
AVPARRPYRSIVEDEEIGNDAAMYIRCLLLWAASRRLKVAYSSRVIYRENSMIVFTMGVD
GSTLERSLGIEPEVRALAQSLEREVTLPTLSQKSLNVLNEDLTFREKIVCSAVRTYLTMK
ERSEQEQQLCQALVITAYIVGILSCEARAQAALPSAVLQNFIADISPFLLSALRHAGCDN
GGGQVFDIIDGHLLYAVARLLREEAPSHLLDEDGVGDISMTWQYLMDDDTLDITSTPFRS
LPELAQPQPVQLQEYPYLKHELVEHLAKTFKVEGHKAKRPIPDGYGAANELIGWDITTPF
DKFNDVTDADGEREAKIHMTEKEARHAQEFQTKFVRNAFQQAQSMGISGFAAQPLTLVCS
DNEQESTDAAGSGGAGGCGKGAAAKKKKGNNEHEGQRNKKGRSKDDEIREQKNLKDAASS
IQSWLKQMDDHLRSIDPTHGRTTNKDRDDAVKKLLAAVKRLAEAKFTKGFEPDRTIGKSE
GSDISLKISMWRLLVASSGLREAEFALTLEDPSAKNRAVKKKGLKTETAVPYGFTVIDNL
VATISDKSTEWGELEGLRKFKSDITSAEAASYLRWVYLSYVELHIQMKIKCFVVKLRLEN
WRSERERARLAKETPDLSVAIPLFLYCHHHVLSVVQNEGLQISQEDLDTVRSALRHLDFG
EDYYSKLDRAITQWQNKAPSLLGPTMLPRMRQLTDTPEMMQLIHMGHLLERPVIRRPDYR
VAFNPDSWQRELLDIVDNRGSAVVCAPTSAGKTFVSYYCMYNTLRRSNRRIVVYLAPARA
LINQAVADVCARYGSKEYKNSGKYIYGVLGGADYHQFHDSCQVLLTVPETFETMLLSPKY
AEWVDLIDYVILDEIHSMESNGNGDVWERILALLPCPFVALSATLGETQQLCGWLNRVQS
RLKEQAVDTPAKARDYRVHVLPSEGQTIQRWNDIKKYIYLPPPDTRTSLKKLTTTYENRY
IHDLHPLSILTTDQLQRGFPPDITLVPSEVVSLFGEMRTAFDNIIWPKLSSIPRVQMLQS
KLKLLEPGRYFEADLYITQQRARLYEREVKDAFAQWVLLSNSSVKKPDISSDEQVKEFNS
TMKHATETILAAFAQKLNEKEAALGSYAVAAMERKRAQQQSRTNTEGRSEQESDEAVPEA
AFPGSRQFIREQSLNVLREISARDMGPAIVFSFESEDCEDLVKYVVEQLEEAEERYRQTE
EFALYKAKVERAAAEREARHKQRESTLKQKRLRTNEDGEVERAERDVDEGEEDEGEVCEV
PDILPEFTFIGAGCSVEPDVVKELIKDCEGEGEDLLLRALKRGIGMHHAGVKGKLRGHVE
RLFRGRHCGVIFSTETLALGIHSPCRSVVLAGDHILLNPTQFRQMMGRAGRRGLDHLGHL
IFLGITMQRIKRLMTSGMTVIKGNVQMDPISQLRLLQLYDYNTHRSLKHEDAWKQHVKKL
AERLFVNPLFFQRREAFAQSNMEGFTIEYLQMLLVFLQKQGLHFRDRPSSLGSLLQDVMY
VFREAHVGNEGFAFIRMLTSGVFHEAHYPPALDKELHSGVTDEPIAELLAYLFSFHQTCG
VPLEIHRSALLDPAVSVVWEGKTNATQHRVVLSPVDVCSPSVRPFDNTEFFALLSAFYNQ
LASRLDEKKEKEEKGKEQEEEEEEESSEGPRLPYVETGGDQLIFGNGAGDFPLMDALKES
AVQFKARHPFVAISGCGDVFTSVDEVVFSLRDDLFCDRRLLPVLDVSDGWRHDGAQVLIN
ACLADFLRVKAQIDTTRKNYRFTMLEELNGLSQSLSYSVLNRAEKLISNLAGLVRKAHLP
AASILTAIMPDESFTAQEEGYSAGAPRLLKVAERLNSLQLQIQKRFAEEKYAAKKAKWVS
ELAAKRNEQK
NT seq
6513 nt
NT seq
+upstream
nt +downstream
nt
atggctactcagcaacgggatcttaacctgctgttcggtaactgtctcaaggatgatgat
tttttaaaaattcctatggataccgtaggggccctacaggccattttcgaagccaaaaac
attccgattcaggaagaggctgatgcctcatatgaggggaaaatcgctcaagttgcacgt
cgccgcagcgcattaagtcgcgtatgtgacgccgtgttatccgcgttccgaaacggaggg
aagccaccagccggtggaattgtcggcaccctgaagcacgaggaagaggaacgcaatgcg
tggaagttccttgttgctgccgtccagaaggatgggaagatgcgagctgtgattgaagaa
gagctgctgcgtacggcggtggagcaccattacgccactgcacggcccgaactctgtgac
atgttcgcacatcttgccgcaacggagatgttttttatagacggtgattccttgttcatg
tctgccctctcaccaccaaatgtagactgggacctcatacagccattacatgtcatgtac
aatgcacaaaagctgctcttcgatatggagtgccgcggggcccgattccacattgttttc
ttcgatagtatgttgtggatgtgggaacgagcccctgcgaaaatgctgatgagggaaaac
ttacgactggcactgacagccgcgagcgagtgcccaggcggctcccgcttcaccgtgcgt
acctttccaagtttccatagtgaggcctttgagacctacctgaaagagtgggagccggag
tttatcttcatgtctgacggtgagcaactgggttccttgaacccgctgcaagagtttttt
gtcaatccggaggttgaaacaactaatgcatcctcaggtgtcaactccagcggtgccgtc
gctgtgcctgcacgtcggccgtacaggagcatcgttgaggacgaggaaataggaaatgat
gcggctatgtatattcgatgtctgctgctttgggcagcctcccgccgcctcaaagtcgcg
tactcgtctcgtgtcatctacagggagaactctatgatcgtcttcaccatgggcgtggac
ggctcaacccttgagcgctcgctgggaatcgagccggaggtgcgcgcgttggctcaatca
ctcgaacgtgaagtgacgttgcccacattgtcccaaaaatcattgaacgtgctgaacgag
gacctgacattccgtgagaagattgtctgttcggcagtacgcacctatctaaccatgaag
gaacgaagcgaacaagagcagcagctttgtcaggcccttgttataacggcttacattgtg
ggaatactgagctgcgaggccagggcccaggcggcattacccagcgccgtgctccaaaac
tttattgcggatatctcaccatttctccttagcgcacttcgacacgctggctgcgacaac
ggaggcggtcaggtattcgacattatcgacggacatctcctctacgccgttgcgcgattg
ctacgcgaagaagcgccaagccatttgttggatgaagacggtgtaggggacatctccatg
acttggcagtatcttatggacgacgacacacttgacattacctcgacaccgtttaggagc
ctccctgagctagctcagcctcaacctgtgcagcttcaggaatatccgtaccttaaacac
gagttagtagagcacctggccaaaaccttcaaggtggagggacacaaggcaaagcggccg
atacccgatggctacggcgccgccaatgagcttattgggtgggatataaccactcctttc
gacaagttcaacgacgttactgatgctgatggggagcgtgaggcaaagattcacatgact
gagaaggaagcaagacatgcgcaggagtttcagacgaagttcgtccgtaacgccttccag
caggcgcagtccatgggaataagtggtttcgccgcccaaccactaactttggtttgctcg
gataatgagcaagaaagcactgacgccgctggatcaggaggtgcaggagggtgtggtaag
ggtgcggccgcgaagaagaaaaaggggaataatgagcacgagggacagcgtaataagaag
gggcgtagcaaggatgatgaaattcgtgagcagaagaatttgaaagacgccgcaagtagc
attcagagttggttgaagcaaatggacgatcacctccgcagcatcgacccaacgcacgga
cgtacgaccaacaaagatcgtgatgacgctgtgaagaaacttttggctgcagtcaagcga
ctcgcggaggcaaagttcaccaaaggtttcgagcccgatcgcacgattggaaagagtgaa
ggtagcgatatttcgttaaagatttccatgtggcgcctgcttgtggcttccagtgggctc
cgtgaggcggagtttgcgctcacgcttgaagatccctcggcaaagaaccgcgctgtcaag
aaaaagggcttgaagacggagactgctgtgccatacggttttacagtcattgataacctc
gtcgccaccataagtgataagagcacagaatggggagaactggaggggctgcggaagttc
aagtcggatataacaagcgcggaagctgcgtcgtacctgcggtgggtgtatctgtcctac
gtggaactgcacatccagatgaaaatcaaatgcttcgtagttaaacttcgtctcgaaaac
tggcgtagtgagcgggagcgtgcccgtttggccaaggaaacaccggatctatcggtagcc
attccgctgtttctttattgccaccatcacgtcttgtcggtggtccaaaacgagggtctg
caaatatcgcaagaggaccttgacacggtacgctccgctctgaggcacctggactttggg
gaagattactacagcaagctggaccgtgccatcactcagtggcaaaataaggcaccgagt
ttgttagggccaacgatgctcccgcggatgcggcaactgaccgacacaccagaaatgatg
caactcattcacatgggacacctgcttgagcggccggtcattcgaagacccgattaccgc
gttgccttcaacccagacagttggcagcgagagctccttgacatcgtggacaatcgcggg
agtgctgtagtgtgtgccccaacttcagctgggaaaacgtttgtttcgtattactgcatg
tataacactcttcgccgctccaacaggcggattgttgtgtaccttgctcccgcccgtgcg
ttgattaatcaagcggtggccgatgtctgcgctcgctatgggtccaaagagtacaaaaat
agtggtaaatatatttatggtgttcttggtggggccgactaccatcagttccacgattcc
tgccaagtacttctgactgtgcccgagacatttgaaaccatgttgctttcacccaagtac
gctgaatgggttgaccttatcgattacgtaattctcgatgagattcactccatggagagc
aatggcaatggtgacgtgtgggaacgcattcttgcccttctgccctgccctttcgttgcg
ctttcagccacgctgggagaaactcagcaactgtgtgggtggcttaatcgcgtgcaatct
cggctgaaggagcaggcagttgacacacccgctaaggcacgtgactatagggtacacgtg
cttccatcggagggccaaaccattcagcgatggaatgacataaagaagtacatttatctt
ccccctcccgatacgcgtacgtctttgaagaaactcactaccacatatgagaaccgctac
atccacgacttacatcccttgtccatcctcacaacggaccaactccagcggggattccct
cctgacattacccttgtccccagtgaggtggtatcattatttggggaaatgcgaaccgcc
ttcgataacatcatttggccgaagttgtcttcgataccgcgggttcagatgctgcagtcg
aagctcaagctccttgagccagggagatactttgaagcggacttgtatattacccagcag
cgtgcacgtctgtatgaacgggaagtaaaggacgccttcgctcagtgggttctgctaagc
aacagtagcgtgaagaagccggatatttcctccgatgaacaggtgaaagagttcaactcc
acgatgaaacatgcaacggagaccatccttgcagcctttgcgcaaaagttgaacgagaag
gaggcggcgctcggtagctatgctgttgcagctatggagaggaagcgcgcacaacaacaa
agcaggaccaacactgagggtagaagtgagcaagagtcagatgaggcggtgccggaggcg
gcttttccgggatcaaggcaatttattcgagagcaaagtttgaatgtgttgcgcgagatt
tccgctagggacatgggcccagctattgtgttcagcttcgagtccgaagactgtgaagac
ttggtgaagtacgttgtggagcagctggaagaggcagaggagcgctaccggcaaactgag
gaattcgccctctacaaagccaaggtggagcgcgcggccgcggagcgggaggcgaggcac
aaacaacgcgagtccacgctgaagcaaaagcgcctcaggactaatgaggatggtgaggtg
gagagggccgagcgtgatgtggacgaaggtgaagaagatgagggggaggtctgcgaagtc
ccagatattcttcccgagttcactttcattggggcggggtgcagcgtggaacccgatgtc
gtaaaggaactaataaaggactgcgaaggtgagggggaggacctccttcttcgcgcttta
aagcggggtattgggatgcatcatgccggtgtgaagggtaaacttcgtggtcacgtggaa
aggctgttccgaggccgccactgcggtgttattttctccacggaaacattggcgctgggc
attcacagcccgtgtcgttctgttgtactcgccggtgatcacatcctgttaaatccgacg
cagttccgtcaaatgatgggtcgtgcgggtcgtcgtggtctcgatcacctcggccacttg
attttcctagggattaccatgcaacgcattaagcggcttatgacgagcggcatgacggtg
attaaggggaatgtgcagatggaccccatatcacagttgcgactacttcagttatatgat
tataacacgcacagatcgttgaagcacgaggacgcatggaagcagcacgttaagaagttg
gccgagaggctgtttgttaatccgctctttttccaacgccgggaggcatttgcacaaagt
aacatggagggattcaccatagagtacctgcaaatgctccttgtattcctgcagaagcaa
ggactccactttcgggaccgcccctcttcattgggttccttgttgcaagatgtcatgtac
gttttcagggaggcccatgtgggtaatgagggattcgcctttattcgcatgctgacctct
ggagttttccatgaggctcactatccacctgctctcgataaggagctacacagcggtgtt
acggatgaacctattgccgaactgcttgcctatctcttctcattccaccaaacatgtggt
gtaccgctggaaattcatcgttccgctttacttgacccggctgtaagcgtggtgtgggag
ggcaaaacaaatgccacacaacatcgtgtcgtactgtcgcccgttgatgtttgctccccc
tccgtacgtccttttgataacacagagttctttgctctgctttctgccttctacaaccaa
ttggcgtcaaggttggacgagaagaaggagaaagaagagaagggaaaggagcaggaagag
gaggaagaggaggaatcgagtgaaggtccccgcttgccatacgtggaaacgggtggcgac
caacttatatttggcaacggcgccggtgatttcccactaatggatgcgctcaaggaatct
gccgttcagtttaaggctcgtcacccgtttgtggccatcagtggttgcggtgacgtcttc
acttctgttgatgaagttgtcttttctctccgcgacgatctcttctgcgaccgtcgtctg
cttcccgttctcgatgtatcagacggatggcgtcatgatggagcgcaggttctcatcaac
gcctgtctcgctgatttcctccgcgttaaagcgcagattgacaccactcggaagaactac
cgcttcacgatgctggaggaactcaatgggctctcacagtctctttcctactcggtgctc
aacagagccgaaaaactcatttccaatttggctggactggtgcggaaggctcacttaccg
gccgccagcattctaacagccattatgcctgatgaatcttttacagcacaggaggaaggt
tacagtgcgggagctccgaggttgctgaaagtagccgagcggttaaattcacttcagctg
caaatacagaagcgatttgccgaggaaaagtacgccgccaaaaaggcgaaatgggtgagc
gagctcgctgcaaagcgaaatgagcagaagtga
DBGET
integrated database retrieval system
