Trypanosoma brucei brucei: Tb927.5.1340
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Entry
Tb927.5.1340 CDS
T01013
Name
(RefSeq) hypothetical protein, conserved
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
tbr
Trypanosoma brucei brucei
Pathway
tbr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tbr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Tb927.5.1340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tbr03019
]
Tb927.5.1340
03041 Spliceosome [BR:
tbr03041
]
Tb927.5.1340
Messenger RNA biogenesis [BR:
tbr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
Tb927.5.1340
Spliceosome [BR:
tbr03041
]
Complex B
Other components
Prp19-related factors
Tb927.5.1340
Complex C
Tb927.5.1340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_C
HAT_PRP39_N
TPR_14
HAT_Syf1_M
Suf
NRDE-2
T7SS_EccA1_N
Motif
Other DBs
NCBI-GeneID:
3657246
NCBI-ProteinID:
XP_844808
UniProt:
Q57VC9
LinkDB
All DBs
Position
5:436599..439061
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AA seq
820 aa
AA seq
DB search
MGTTSTDTLELEVLRNPSNVRGWLQFIRSILCSDYPNQVSKANAVNVAYERALRANGYSY
KLWMGYISYRRENTRELTSPNEWFRSLRDIYDRAVEKLPMMPLLWTSFIEFAMDGSVAPR
ITLTRHVITRALEALPFTQHHRIWRLAKLWVSRPHVPMPTATYIWRLYLLYDPSTENQRN
YFHMLWEKGNASDFLVECAAFLLRDSTSHGGLLRDIAFWETVRTALETKGLCFGGDISQV
EKIVQMAADYCASPAEFRLSYAVFLANQGELSMARETLWAILNDVDNPAVFCRAFTAALA
FESQIIDSLAMDSSIHALDEVKYQQLREKLCGDVPDPLYHLTRLTQQHPMLLNQLQLRAD
RHCTALWLKRIEILKEMECNGVATSSDVIALYRQAITQCTSGMPNVEAATAQLFESYACY
LWENNLRTDAVTVADEGAWFVKFSSTTSNVLLMGLVVEFSQLTDPARTLDKLVSRLVKAT
NVSNSIRSKGLARQVVVKNLARDPRAWVLAVDVAFHRLLLKNTGESGGRSNEELKNLISL
FCNSSGYTAEGACYVACRLWQSGDVSAAFQEFERALVAFAAAPLAVLHILQQYLSCLCVS
FGTRLPLHRFREFSKLGLDVAQFTMRSSPVSTMEFLLNCVTLESRLGFSGSAVQIARECL
HLALKHQAEYDSLLFGVLDAVLEVTFRLHGSQALRHYCAELLERQKLTPQLIQRLALWWA
AVERRTGNADRAHTVMEACCKSQDPSSSHGAVFWSMWESICNTVKQFEGVHRRKQQAALK
YSSGNNSADAAVDGVDGNKNNNVGASGNEAIEVVPVPALT
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atgggaacaacatccacagataccctggaactggaggtgctgcgcaacccatcaaatgtg
aggggttggctacagttcattcgaagtattctgtgttcggactaccccaatcaggtgtct
aaggcaaatgcagttaacgtggcctatgaacgtgccctccgcgccaacggttactcgtac
aagctctggatgggttatatttcataccggcgcgagaacacacgagagctcacttcccct
aatgagtggttcaggtctctgcgggacatctatgatcgagcggtggaaaaacttcccatg
atgccactgttgtggacttctttcattgagttcgctatggatgggtcggttgcacctcgg
attacactcactcggcacgtgataactagggcattggaggcacttcccttcactcagcat
caccgtatatggcggcttgctaagctttgggttagccgaccacacgtacccatgccaacg
gcaacgtatatatggcggctgtacttgctgtacgatccgtcaactgaaaatcaacgaaac
tactttcacatgctctgggagaaggggaatgcatcggactttctcgttgagtgtgcggca
tttttgttgcgggatagcacatcgcatgggggtctgcttcgtgatatcgctttctgggaa
acagtacgcacagctttagaaaccaagggactttgcttcggcggtgatatttcacaggtg
gagaaaattgtccagatggcggcggattactgcgcgtcgccggcagagtttcgcctttcc
tatgctgttttcttggccaaccagggagagctgagtatggcacgtgagacactgtgggca
attttaaatgatgttgacaatcctgctgttttttgcagggctttcaccgcagctcttgcg
tttgagagccaaatcattgactccctggcgatggactcctccatccatgctcttgacgag
gtaaagtatcagcaactgcgggagaagctctgtggagatgtaccggaccccttgtaccat
ctaacccgccttactcagcagcacccaatgctgttgaatcagcttcagctgcgggcagat
cgccactgcacggcactctggctgaagcgcatcgaaattttgaaggaaatggagtgtaat
ggagtcgccacgtcaagtgatgtcattgcgttgtatcggcaggccatcacgcagtgcacc
tccggaatgccgaatgttgaggcggctacagcccaactgttcgagtcgtatgcgtgctat
ttgtgggaaaacaatcttaggacggacgcagtgacagtagcggatgagggtgcgtggttt
gttaaattttcttccactactagtaatgtgcttttgatggggttggtcgtggagtttagt
cagcttacagatcccgcgcggacactggataagcttgtctcaagacttgtcaaggcaacg
aatgtgtccaactctattagatccaaaggacttgccagacaagtggtggtgaagaactta
gcaagggatccccgtgcatgggtgcttgccgttgatgtagcctttcatcgattgttgttg
aagaacaccggggagagtggtggaaggagcaacgaagaactaaaaaatttaataagcctt
ttctgcaactcttcggggtacacggcggagggtgcctgttatgtggcatgccgcctgtgg
caaagtggcgatgtgagtgcagctttccaagagtttgagcgcgcgctggtggcatttgcg
gctgctccgttggccgttcttcacattcttcagcagtacttaagttgtttatgtgtttcc
ttcgggacacggttgcctctccaccgatttcgggagttctccaaattgggtctggacgtt
gcacagttcaccatgcgatcatcccccgtgtctacgatggagttccttcttaactgcgtc
actttagaatctcggctaggtttttctggaagtgccgttcaaattgcgcgggaatgtctt
cacttagcgttgaaacatcaagcggagtatgacagtcttttgttcggcgttttggatgcc
gtcctcgaggtgacgtttagattgcatggaagccaagcactgcgtcactattgtgcggag
ttgctggaaagacagaaactaacaccacaattgattcagcgactggctttatggtgggct
gcggtggaaaggcggactggtaatgcggatagggcccacaccgtgatggaggcctgttgt
aagtcacaagacccgagcagtagtcatggtgctgttttctggagtatgtgggagtcgata
tgtaacaccgtaaagcagtttgagggggtgcacaggcggaagcagcaggcggcactcaag
tacagtagtgggaataattcggctgacgctgccgtggatggcgttgatggaaataaaaac
aataatgtcggtgccagtggcaacgaagctattgaggttgtaccggtgccagcacttacg
tga
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