Thermococcus barossii: A3L01_00795
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Entry
A3L01_00795 CDS
T05081
Name
(GenBank) RNA-binding protein
KO
K03679
exosome complex component RRP4
Organism
tbs
Thermococcus barossii
Pathway
tbs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tbs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A3L01_00795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tbs03019
]
A3L01_00795
Messenger RNA biogenesis [BR:
tbs03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
A3L01_00795
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
A3L01_00795
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N_2
KH_6
RRP4_S1
KH_1
ECR1_N
RRP40_S1
KH_2
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
ASJ03973
UniProt:
A0A2Z2MEF0
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All DBs
Position
144171..144941
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AA seq
256 aa
AA seq
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MRRIFVKNRELVVPGTLLAQGPFKSGRGTFREGNRIYSTVVGLVEIRGDSIRVIPLEGPY
IPEVGDNVLGKITDVRFSNWSVDIGAPYEANLRVQDAVEERIDILKTDLRKIFDIGDIIY
ARIKAYNEINQIDLTTKGMPFKGGPLRGGQIVKITPSKVPRLIGKGGSMINLIKKLTGTR
IIVGQNGWVWVSGRNDELEKLAIEAILKVDRESHTQGLTDRVKELLMTRLQELKERGVVE
EIPKIEEQTAGEGEGE
NT seq
771 nt
NT seq
+upstream
nt +downstream
nt
atgagacggatttttgtaaagaatagggaactggtggtcccgggcactttgcttgcccag
gggccgtttaagagcggaagagggactttcagggaaggcaacagaatatactccacggtc
gttggactggttgagataaggggagactccataagggtgatacccctcgaaggaccgtac
atcccagaggtgggcgacaacgttctcggtaagataaccgacgttaggttctccaactgg
agcgtggacataggggcaccctacgaggccaacctgcgcgtccaggacgcggtggaggag
cgcatagacatactgaagacggatctgaggaagatattcgacattggcgacataatctac
gccaggataaaggcgtacaacgagataaaccagatagacctgacgacgaagggcatgccc
ttcaagggtggcccgctcaggggagggcagatagtgaagataaccccctccaaggtgccg
aggctcatcggcaagggcggttcgatgataaacctcatcaagaagctgaccgggacgagg
ataatagtcggccagaacggctgggtctgggtcagcgggagaaacgatgaacttgagaag
ctcgcgattgaggcgatactcaaggtggacagggagagccatacccagggactgaccgac
agggtcaaggaactcctcatgaccaggctccaggagctcaaggagaggggagtcgttgag
gagatacccaagattgaagagcaaactgctggagagggtgaaggagaatga
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