KEGG   Thermococcus barossii: A3L01_00795
Entry
A3L01_00795       CDS       T05081                                 
Name
(GenBank) RNA-binding protein
  KO
K03679  exosome complex component RRP4
Organism
tbs  Thermococcus barossii
Pathway
tbs03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tbs00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    A3L01_00795
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tbs03019]
    A3L01_00795
Messenger RNA biogenesis [BR:tbs03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     A3L01_00795
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     A3L01_00795
SSDB
Motif
Pfam: ECR1_N_2 KH_6 RRP4_S1 KH_1 ECR1_N RRP40_S1 KH_2 KH_KhpA-B
Other DBs
NCBI-ProteinID: ASJ03973
UniProt: A0A2Z2MEF0
LinkDB
Position
144171..144941
AA seq 256 aa
MRRIFVKNRELVVPGTLLAQGPFKSGRGTFREGNRIYSTVVGLVEIRGDSIRVIPLEGPY
IPEVGDNVLGKITDVRFSNWSVDIGAPYEANLRVQDAVEERIDILKTDLRKIFDIGDIIY
ARIKAYNEINQIDLTTKGMPFKGGPLRGGQIVKITPSKVPRLIGKGGSMINLIKKLTGTR
IIVGQNGWVWVSGRNDELEKLAIEAILKVDRESHTQGLTDRVKELLMTRLQELKERGVVE
EIPKIEEQTAGEGEGE
NT seq 771 nt   +upstreamnt  +downstreamnt
atgagacggatttttgtaaagaatagggaactggtggtcccgggcactttgcttgcccag
gggccgtttaagagcggaagagggactttcagggaaggcaacagaatatactccacggtc
gttggactggttgagataaggggagactccataagggtgatacccctcgaaggaccgtac
atcccagaggtgggcgacaacgttctcggtaagataaccgacgttaggttctccaactgg
agcgtggacataggggcaccctacgaggccaacctgcgcgtccaggacgcggtggaggag
cgcatagacatactgaagacggatctgaggaagatattcgacattggcgacataatctac
gccaggataaaggcgtacaacgagataaaccagatagacctgacgacgaagggcatgccc
ttcaagggtggcccgctcaggggagggcagatagtgaagataaccccctccaaggtgccg
aggctcatcggcaagggcggttcgatgataaacctcatcaagaagctgaccgggacgagg
ataatagtcggccagaacggctgggtctgggtcagcgggagaaacgatgaacttgagaag
ctcgcgattgaggcgatactcaaggtggacagggagagccatacccagggactgaccgac
agggtcaaggaactcctcatgaccaggctccaggagctcaaggagaggggagtcgttgag
gagatacccaagattgaagagcaaactgctggagagggtgaaggagaatga

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