KEGG   Thermococcus barossii: A3L01_00805
Entry
A3L01_00805       CDS       T05081                                 
Name
(GenBank) RNA-binding protein
  KO
K12589  exosome complex component RRP42
Organism
tbs  Thermococcus barossii
Pathway
tbs03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tbs00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    A3L01_00805
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tbs03019]
    A3L01_00805
Messenger RNA biogenesis [BR:tbs03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     A3L01_00805
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     A3L01_00805
SSDB
Motif
Pfam: RNase_PH RNase_PH_C Mon2_C
Other DBs
NCBI-ProteinID: ASJ03975
UniProt: A0A2Z2MGX6
LinkDB
Position
145689..146498
AA seq 269 aa
MEVMASIMRDHILSLLKEGRRIDGRGLEDYRDLEVRVNVIEKAEGSAWVRLGNTQVLVGI
KVDMGEPFPDLPEKGVITTNVELVPLASPSFEPGPPDENAIELARVVDRGIRESQAVELE
KLVIVPGKLVRVVFIDVHVLDHDGNLLDASGIGAIAALLSTKMPKVVYDEENDEVQVLDE
YEPLPVSRVPIPVTIAKIGGNLLADPNLDEERVMDGRITITTDENGMISSVQKSEGGSFK
LEEVMYAVDLALKKAAEIREKVLEAVGAE
NT seq 810 nt   +upstreamnt  +downstreamnt
atggaagtgatggccagcataatgcgcgaccacatcctgagccttcttaaggagggcagg
cgcatagacggccgcggtcttgaggactatcgcgaccttgaggtcagggtcaacgtcatt
gaaaaggccgagggctcggcgtgggtgaggctcggcaacacccaggttctcgtcggcata
aaggtggacatgggcgagccgttcccggaccttcctgagaagggcgtcataacgaccaac
gtcgagctcgtgcctctcgcctccccgagctttgaacccggcccgcccgacgagaatgcc
atagagctggcgcgtgtcgtggacaggggtataagggagagtcaagctgtggagcttgag
aagctggtcatagtccctggcaagctcgtccgtgtagtcttcatagacgtccacgtcctt
gaccacgacggaaacctgctggacgccagtggaatcggtgccatcgccgcccttctgagc
acgaagatgccgaaggtcgtctacgacgaggagaacgacgaggttcaggttctcgatgag
tacgagccgcttccggtgagcagggtgccgattcccgtgacaatagccaaaatcggcggc
aacctccttgccgaccccaacctcgacgaggagcgcgtcatggacggcaggataaccata
accaccgacgagaacggcatgatttcctcggttcagaagagcgagggcggcagctttaag
cttgaggaggttatgtacgcggttgaccttgccctgaagaaggccgctgagatcagggag
aaggttcttgaggccgtaggggccgagtga

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