Thermococcus barossii: A3L01_04355
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Entry
A3L01_04355 CDS
T05081
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tbs
Thermococcus barossii
Brite
KEGG Orthology (KO) [BR:
tbs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tbs03016
]
A3L01_04355
Enzymes [BR:
tbs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
A3L01_04355
Transfer RNA biogenesis [BR:
tbs03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
A3L01_04355
Prokaryotic type
tRNA splicing ligases
A3L01_04355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ASJ04638
UniProt:
A0A2Z2MRV0
LinkDB
All DBs
Position
complement(788602..790041)
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AA seq
479 aa
AA seq
DB search
MVPLKRIDKIRWEIPKFDKRMRVPGRVYADDQLIEKMRGDRTLEQAANVAMLPGIYKYSI
VMPDGHQGYGFPIGGVAAFDVKEGVISPGGVGYDINCGVRLIRTNLTEKEVRPHIKELVD
TLFRNVPSGLGSKGRVRLHWTQLDDVLADGAKWAVDNGYGWKEDLEHLEEGGRMEGADPN
AVSQKAKQRGAPQLGSLGSGNHFLEVQVVDKIFDEEIAKAYGLFKGQVVVMVHTGSRGLG
HQVASDYLRIMEKANRKYGVPWPDRELVSVPFQTEEGQRYFSAMKAAANFAWANRQMITH
WVRESFEEVFKRKAEDMEMSIVYDVAHNIAKVEEHEVDGKKVKVVVHRKGATRAFPAGHP
DVPRAYRDVGQPVLIPGSMGTASYVLAGAEGSMRETFGSTCHGAGRLLSRKAATRQYRGD
RLRNELMRQGIYIRAASLRVVAEEAPGAYKSVDNVVSVVHQAGIAKLVARMRPMGVAKG
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atggtaccgctgaagaggatagataaaatacgctgggagataccgaagttcgacaagaga
atgcgcgttccgggaagggtttacgctgacgaccagctcatcgagaagatgcgcggtgac
aggacgcttgagcaggcggccaacgtagccatgctccccggcatctacaagtactcaatc
gtcatgcccgacggccaccagggctacggcttcccgatcggtggggtagctgcctttgac
gttaaagagggtgtcataagtccagggggagtcggatacgacatcaactgcggcgtcagg
ctcataaggacgaacctgaccgagaaggaggtaagaccccacatcaaggagctcgtggac
acgctcttcagaaacgtgccgagcgggcttggaagcaagggacgcgtgaggctccactgg
acccagctggatgatgtcttagcggacggtgccaaatgggccgttgacaacggctatggc
tggaaggaggacctcgaacaccttgaggaaggcggcagaatggagggtgcagacccgaac
gcggtcagccagaaggcaaagcagcgcggagcaccccagctcggttccctcggttctgga
aaccacttccttgaggttcaggtcgttgataaaatctttgacgaggagatagcgaaagcc
tacggtctctttaagggacaggtcgttgtgatggtccacaccggttcaaggggtctcggc
catcaggtggcgagcgactacctcaggataatggagaaggccaacaggaagtacggggtt
ccgtggcccgaccgcgagcttgtcagcgttcccttccagaccgaggaggggcagaggtac
ttcagcgcgatgaaggccgctgcgaattttgcgtgggccaacaggcagatgataacccac
tgggtcagggagagcttcgaggaggtcttcaagcgtaaagcggaggacatggagatgagc
atcgtctacgacgtcgcccacaacatagcaaaggtcgaggagcacgaggtcgatgggaag
aaagtcaaggtcgttgttcacaggaagggggcgacgagggcattcccggccggccacccc
gatgtgccaagggcttaccgtgacgttggccagccggttctgattccgggctcgatggga
accgcgagctacgtcctggccggggcggagggctcgatgagggagaccttcggttcaacc
tgtcacggtgccggtaggttgctcagcaggaaggctgcgacgaggcagtatcgtggcgac
aggctcaggaacgaactcatgaggcagggtatctacattagagccgcctcgctcagggtc
gttgccgaggaggcgccgggcgcatacaagagcgtggacaacgtggttagcgtcgtccat
caggcagggatagcaaagctcgtcgcgagaatgcgcccgatgggtgtcgccaagggttga
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