Thermococcus barossii: A3L01_05930
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Entry
A3L01_05930 CDS
T05081
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tbs
Thermococcus barossii
Pathway
tbs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tbs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A3L01_05930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tbs03019
]
A3L01_05930
03009 Ribosome biogenesis [BR:
tbs03009
]
A3L01_05930
Enzymes [BR:
tbs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A3L01_05930
Messenger RNA biogenesis [BR:
tbs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A3L01_05930
Ribosome biogenesis [BR:
tbs03009
]
Prokaryotic type
rRNA helicases
A3L01_05930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
DUF2278
Motif
Other DBs
NCBI-ProteinID:
ASJ04924
UniProt:
A0A2Z2MM73
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All DBs
Position
complement(1102852..1104090)
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AA seq
412 aa
AA seq
DB search
MSFESLGLSEATLVAVRQKGFETPTDIQREVIPRLLSGGVDIIGQSQTGTGKTAAFALPI
IEAIDPKVKAVQAIILTPTRELALQVADEIKSLRGRKRVYVYAVYGGQPIGPQIRALERG
THVVVGTPGRILDHIRRGTLDLSSVRFFILDEADRMLDMGFIDAIEAIFRETPRRKRVLM
FSATMPPEIRRLAGRYMGDYEVVSVSSDELVPEMVDQEYVEVVPARKFTVLKKILDGDFY
GIVFCATKRETRELSEKLRRQGYSAEALNGDMSQAARERTFWRFKTKRTRILVATDVAAR
GLDVQDISHIVNYSLPMTAEDYVHRIGRTGRMGKRGRAITFIMPGEFKRLRYIAQVAGVE
IRKSELSEEIPKEYQERYEHGRSDGYRRSGRRGNSRYSGNSRSYSKNSRGRW
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgaaagcttgggtttatccgaggccacgttagtggccgtcaggcagaagggt
tttgagaccccaacggacattcagagggaggtcataccgcgtcttctatcgggcggcgtg
gatataatcggacagtcccaaacgggaactggaaagaccgcggcatttgcgctccccata
atcgaggcgattgacccgaaggttaaggcggttcaggcgataatcctgacacccacgagg
gagctggccctccaggtggccgatgaaatcaagagcctccgcgggaggaagagggtttac
gtttatgcggtctacggtggccagccgataggaccgcagataagggccctcgagcgaggg
actcatgtcgtagttggaacccccggaaggattctcgaccacataaggcgtggaaccctc
gacctgagctccgtcaggttcttcatcctcgatgaggccgacaggatgctcgacatggga
ttcatagacgccatagaggcgatcttccgtgagactccgaggaggaagagggtgctgatg
ttctcggccacgatgccgccagagataagaaggctcgctgggcgctacatgggggactac
gaggtcgtgagcgtgagtagcgacgagctcgtgcccgaaatggtggaccaggagtacgtc
gaggtcgttcctgcgaggaagttcaccgtgctgaagaagatactcgatggggacttctac
ggcatagtcttctgcgccaccaagagggaaaccagggagctgagcgagaaactcaggagg
cagggctacagtgccgaggccttgaacggcgacatgagccaagcagcgcgcgagagaacc
ttctggcgcttcaaaacaaagcggacgagaattcttgtcgccaccgacgtcgccgcgagg
ggcctcgacgtccaggacataagtcacatcgtgaactactccctgcccatgacagcggag
gactacgtccacaggataggcaggaccggcaggatggggaagcgcggaagggcgataacc
ttcatcatgcccggcgagttcaagaggctgcgctacatcgcccaggtcgcaggggtggag
ataaggaagtccgagctgagcgaggagataccaaaggaataccaggagaggtacgaacac
ggccgttccgacggctacagaagaagtgggagaagggggaactcccgctattcaggaaac
tcccggagttactctaagaactcccgaggtagatggtga
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