KEGG   Thermococcus barossii: A3L01_07840
Entry
A3L01_07840       CDS       T05081                                 
Name
(GenBank) DNA repair protein Rad50
  KO
K03546  DNA repair protein SbcC/Rad50
Organism
tbs  Thermococcus barossii
Brite
KEGG Orthology (KO) [BR:tbs00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tbs03400]
    A3L01_07840
DNA repair and recombination proteins [BR:tbs03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     A3L01_07840
    Archaeal homologous recombinant proteins
     A3L01_07840
SSDB
Motif
Pfam: AAA_23 Rad50_zn_hook SMC_N AAA_15 AAA_13 ABC_tran AAA_21 AAA_29 Nuf2_DHR10-like SbcC_Walker_B HMBD ABC_ATPase DUF1664 FtsK_SpoIIIE HIP1_clath_bdg Crescentin EzrA PUMA_CC COG6_N RsgA_GTPase DUF6011 DUF5679 NTPase_P4 Laminin_II MscS_porin
Other DBs
NCBI-ProteinID: ASJ05278
UniProt: A0A2Z2MTH7
LinkDB
Position
1437051..1439708
AA seq 885 aa
MRIEKLIIKDFRSHRLTKVSFTSGINLIVGQNGSGKSSLLDALLVGLYWPSKPKDLKKED
ILRVDGQSTEITVFFEKDGISYQLHRNITRGVAFAKYHDGSSWKHATETSQKAVRDWMEK
LVPYDVFLNAIYIRQGEIDAILESDESREKVVRQVLGLDKYENAYKNLLEVRKEIEQRIK
SIEDYLKSTENLDELIGEMEKELSGALREINELSPQIPKLERELERVEKKLGELDELEKS
LNSLRLEIKEREGNRKRLETRVEGLEKRIAEGEERLHELEEKVREFNELREKAELYLRLS
NFRKRYTDEKARNEKLAENYRAQIEAIDERLAELSELEKRLGELEKEKKELERKLRRLEK
DAKAYEDARSISSQLEGLKKRLKLSREEIGDLAKEIEDARKRKEEIQRELEEINEERGGL
KNRVKERNRAIMELKKAKGKCPVCGRKLTEKHRKEIIEKYQAELKEVSLSLKELDERERK
LRGELVRIEKVLKRERELIAAKELLDQISGLEERLKEYDLEKLGKRAEEYERVKGELNRL
EGELESARTELEKVKALEKKRTLTEGKLRSVEEKLRKLDDELREMGFSGMEELDEKLAGL
EPTYRRYLELKGAESELQRERKNLERLRTELEGVKRELDEENRTLKRLTEALAEKERLYS
REEHERTREAFTSLREELAGKRARLEALERKRDETMENLGKLREEKERRREKARELDELR
KARERVQELREKVRRYKAMLKEGALARVGDIASEIFEELTEEKYSGVTVKAEENRIRLGV
LYNGREYGLGFLSGGERIALGLAFRLALSLYLAGEISLLILDEPTPYLDDERRRRLVDIM
QRYLRKIPQVIVVSHDEELKDAADRVIRVSLENGVSVVKEVELGV
NT seq 2658 nt   +upstreamnt  +downstreamnt
atgaggattgagaagctcataatcaaggacttccgttcccacaggctcacgaaggtcagc
ttcacgagcgggataaacctcatagtcggtcagaacggctcggggaagagctcactcctc
gatgcccttctcgttggtctctactggccgagcaagcctaaggacctcaaaaaggaggac
atactcagggtcgacggccagtccacggagataacggtgttcttcgagaaggacgggatc
agctaccagctccaccggaacataacccgcggggtggcctttgcaaagtaccacgacggg
agctcctggaagcacgccaccgagacgagccagaaggccgtgagggactggatggagaag
ctcgttccgtacgacgtgttcctcaacgcgatctacatccgccagggagagatagacgcc
atccttgagagcgacgagagcagggagaaagtcgtcaggcaggttctcggcctcgacaag
tacgagaacgcctacaagaacctcctggaagtccggaaggaaatcgaacaaaggataaaa
tcaatagaggactacctgaagagcacggaaaatctcgacgagctgatcggggagatggaa
aaggagctctcgggcgccctcagggagataaacgagctttcaccccagattccaaagctg
gagagggagcttgaaagagttgagaaaaagctcggggaactcgatgagctggagaaaagc
ctgaactccctccggcttgagattaaagagcgggagggcaacaggaagagactcgaaacc
agggttgagggtctggaaaagcgcatcgccgagggcgaggaacgcctgcacgagctggag
gagaaggtgagggagttcaacgagctcagggagaaggcggagctctatctcaggctctca
aacttcagaaagagatacaccgacgagaaggcgagaaacgagaagctcgccgagaactac
agggcgcagattgaggcgatagatgagcgcctcgccgaactgagtgaactggagaagcgc
ctgggggagctggaaaaggagaagaaggagctcgaaaggaaactccggagacttgaaaag
gacgccaaggcatacgaggatgccaggtccatctcgtcccagcttgagggcctcaaaaaa
cgtcttaagctttccagggaagagataggagacctggccaaggagatcgaggacgcgagg
aagaggaaagaggagatacagagggagctggaggagataaacgaagaacgcggaggcctg
aaaaaccgggtcaaggagaggaacagggccataatggagctgaagaaggcgaagggcaag
tgtcccgtctgcggcaggaagctgaccgagaagcaccgtaaggagataatcgagaagtac
caggccgagctcaaggaggtctccctgtctctgaaggagctcgacgagagggagagaaag
ctcaggggtgagctcgtcaggatagagaaggttctgaagagggagcgcgagctgatagcc
gcaaaagagctcctggaccagatatccggcctggaggagaggctgaaggagtacgacctt
gagaagctcgggaagagggcggaggaatacgagagggtgaagggcgagctgaacagactc
gaaggtgagctggaaagcgccaggacggagcttgaaaaggtgaaggccctcgaaaagaag
aggactctcacggaggggaagctcagatccgttgaggaaaagctcaggaagctcgatgac
gagctccgggaaatgggcttctctgggatggaggagcttgacgaaaaacttgccggcctt
gaaccgacctacaggcgctacctcgaactgaagggggcggaaagcgagctccagagggaa
aggaagaacctggaaaggctcaggacggaactggaaggcgtgaagagggagctggacgag
gagaacaggacgctgaaaaggctcacggaagcgctggcagagaaggagaggctctacagc
agggaggagcacgagaggaccagggaggcgtttacatcgctcagggaggagctggccggg
aagagggcccggctggaggcccttgagaggaagcgcgacgagacaatggagaacctcggg
aagctgagggaggagaaggaacgcaggagagagaaggcgagggaacttgacgagctcaga
aaggcccgcgagagggttcaggagctccgcgaaaaggtgcggcgctacaaggccatgctc
aaggaaggcgcgctggcgagggtcggggacatagccagcgagatattcgaagagctgacc
gaggagaagtactcgggggtcaccgtgaaggccgaggagaacaggataaggctcggggtg
ctctacaacggcagggaatacgggctcgggttcctcagcggtggggagaggatagccctc
ggcctggcgttccgcctggcgctgtcgctctacctggccggggagataagcctcctcatc
ctggacgagccgacgccgtacctcgacgacgagagaaggagaaggctcgtggacataatg
cagcgctacctgaggaagataccgcaggtcatagtcgtttcacacgatgaggagctgaag
gacgccgccgaccgcgtgataagggtcagccttgagaacggcgtttcggtggtcaaggaa
gtcgagctgggggtgtga

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