Telmatherina bonti: 306757295
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Entry
306757295 CDS
T12083
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b isoform 1
KO
K19719
collagen type II alpha
Organism
tbt Telmatherina bonti
Pathway
tbt04510
Focal adhesion
tbt04512
ECM-receptor interaction
tbt04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
tbt00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
306757295 (col2a1b)
04518 Integrin signaling
306757295 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
306757295 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tbt00536
]
306757295 (col2a1b)
Glycosaminoglycan binding proteins [BR:
tbt00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
306757295 (col2a1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
306757295
NCBI-ProteinID:
XP_079098431
LinkDB
All DBs
Position
6:complement(25944887..25991067)
Genome browser
AA seq
1491 aa
AA seq
DB search
MFSFMDSRTVLLLLATHVCLLAIVRCQLDGDQEDAFSCLLDGQRYNDKDVWKPEPCRICV
CDTGTVLCDEIICEELKDCPKPEIPFGECCPICAADQPPSLGVPGAKGQKGEPGDITDVV
GPRGPQGPMGPPGEQGPRGPRGEKGEKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLG
GNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPTGSPGPQGFQGNPGEPGEPGQS
GPMGPRGPAGPPGKPGDDGEAGKPGKGGERGPPGPQGARGFPGTPGLPGIKGHRGYPGLD
GAKGETGAVGSKGEAGAPGESGAPGPMGPRGLPGERGRPGPSGVAGARGNDGLPGPAGPV
GPVGPAGAPGFPGSPGTKGEAGPTGARGPEGAQGPRGESGTPGSPGPSGASGNPGTDGIP
GAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGEIGPA
GLQGAPGPQGEEGKRGPRGEPGAAGPLGPPGERGAPGNRGFPGQDGLPGLKGAPGERGPP
GASGPKGASGDPGRPGESGLPGARGLTGRPGDAGPQGKVGPSGAAGEDGRPGPPGPQGAR
GQPGVMGFPGPKGATGEPGKGGEKGLAGAPGLRGLPGKDGETGPAGPPGPAGLAGERGEQ
GQPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEGGPAGATGPRGERGFPGERGAAGPQGLQ
GPRGLPGTPGTDGPKGAIGPAGASGAQGPPGLQGMPGERGAAGIPGPKGDRGDIGEKGPE
GAPGKDGARGLTGPIGPPGPSGPNGEKGESGPAGPSGAAGVRGAPGDRGETGPLGPAGFA
GPPGADGQPGTKGEQGESGQKGDAGAPGPQGPSGAPGPAGPTGVSGPKGARGAQGPPGAT
GFPGAAGRVGPPGPNGNPGPSGPAGPPGKDGPKGVRGDGGPPGRQGDAGLRGPAGAAGEK
GDPGEDGPPGPPGPSGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAAGGAGDR
GPPGPVGPPGLTGPAGEPGREGNPGSDGPPGRDGAAGIKGDRGSTGPAGAPGAPGAPGAP
GPVGPTGKQGDRGQPGAQGPAGPPGPAGARGMPGPQGPRGDKGEAGESGERGQKGHRGFT
GLQGLPGPPGQAGDQGATGPAGPSGQRGLPGPVGPAGKDGANGLPGPIGPPGPRGRSGET
GPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADQAAGNLRQHDAEVD
ATLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTVDAIKVFCN
METGESCVYPKPTSIPRKNWWSSKSRDRKHVWFGETMNGGFHFSYGDDSLAPNTAAIQMT
FLRLLSTEASQNLTYHCKNSVAYLDASTGNLKKAVLLQGSNDVEIRAEGNSRFTYSVMED
GCTKHTGQWGKTVIEYRSQKTSRLPIVDIAPMDIGGVEQEFGVDVGPVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttatggattccaggactgtactgctacttctagcaacccacgtttgtcta
ttagccattgtgagatgtcaactggatggagaccaggaggacgcttttagctgtttacta
gatggacagcgttataacgacaaggatgtatggaaaccagagccttgtcgcatctgtgtg
tgtgacactggaacagtcctgtgcgatgaaattatctgcgaggagctgaaagactgcccc
aaacctgaaatcccattcggagagtgttgccccatctgcgctgctgaccagcctccatct
cttggagtacctggagctaagggtcagaagggtgaacctggagacattacagatgttgtc
ggaccaagaggaccacaaggcccaatgggcccaccaggagagcaaggaccgcgtggacca
agaggagagaagggagagaagggaagcccaggtcctcgtggcagagatggtgagcctggt
acccctggaaaccctggcccccctggacctccaggaccaaatggaccccctggccttggc
ggtaacttcgctgctcagatggcaggtggttttgacgagaaggcaggtggcgctcagatg
ggtgtgatgcaaggaccaatgggccctatgggacccagaggaccacctggccccactgga
tcacctggcccacaaggtttccaaggcaacccgggagagcctggagagcccggacaatct
ggccccatgggaccccgtggccctgctggacctcctggaaaacctggtgatgatggtgaa
gcaggaaaacctggcaaaggaggcgagcgtggacctccaggacctcaaggtgctcgtgga
ttcccaggaactcctggcttgcctggcatcaaaggacatagaggttatccaggtcttgat
ggtgcaaagggagagactggtgctgttggctccaagggtgaggctggtgctccaggagag
agtggtgcacctggaccaatgggacctcgtggtttgcctggtgagagaggacgtcctggg
cccagtggagttgctggagcacgtggaaatgatggcctacctggtcctgctggtcctgta
ggtcccgttggtccagccggagctccaggcttccctggttctcctggtacaaaaggagaa
gctggaccgactggtgctcgtggacctgagggagcacagggaccccgtggagagtctggc
actcctggatcacccggaccttctggtgcttctggtaaccctggtactgatggtatccct
ggagccaaaggttcagctggtgctcctggcattgctggggctcctggtttccctggacct
cgtggacctcctgggcctcagggagcaactggacctcttggaccaaagggaacatctgga
gatccaggtattccagggtttaaaggagaagctggacccaaaggagaaattggaccagct
ggtcttcagggagcacctggcccacaaggagaagaaggcaagaggggacccagaggtgaa
cctggtgctgctggaccacttggaccccctggagaaagaggcgcccctggtaaccgtggt
ttcccaggtcaagatggtctgcctggtctcaagggagctcctggtgaacgtggaccccct
ggagccagtggtccaaaaggtgcaagtggtgaccctggacgtcctggagagtctggactt
ccgggtgcaaggggcttgactggtcgccctggtgatgctggacctcaaggcaaagttgga
ccctctggagctgctggtgaggatggccgtccaggaccccccggtcctcagggagcccgt
ggacagcctggtgtcatgggattccctggtcccaagggagcaactggtgaacctggcaaa
ggtggtgagaaaggattggctggagctcccggtctaagaggtctgcctggcaaagatgga
gaaactggccctgctggaccccctggccctgctggtcttgctggagagagaggagaacaa
ggacagcctggaccctccggcttccagggtcttcctggaccccctggccctcctggtgaa
ggagggaaacctggagaccagggtgttcctggagagggtgggcctgctggtgccactgga
cccagaggagagcgtggattccctggagagagaggagctgctggccctcagggtctgcag
ggaccaagaggtctacctggaactcctggaactgacggccccaagggtgccattggacct
gctggtgcttccggagctcagggacccccaggcctacagggtatgcctggagagagagga
gctgctggcattccaggacccaaaggagacagaggtgacattggagagaaaggtcctgaa
ggtgctccaggcaaagatggtgccagaggtcttactggtcccattggtcctcccggtcct
tctggtcccaatggtgagaagggtgaatctggccccgctggcccttctggagctgctggt
gttcgtggtgctccgggtgacagaggagagacgggacctctgggacctgctggctttgct
ggacctcctggtgctgacggtcagcctggaaccaagggagagcagggagaatcaggacaa
aagggagatgctggtgccccaggaccccaagggccatctggtgctcctggacctgcaggt
ccaacaggtgtttctggacctaaaggtgctcgtggtgctcaaggtcctcctggtgccact
ggtttccctggagctgctggccgagttggaccacctggccccaatggtaatcctggaccc
tctggtcctgctggccctcctggcaaagatggacccaagggagtgagaggagatggtgga
ccaccagggaggcagggtgatgcaggactccgtggtcctgctggggctgctggagagaaa
ggagaccctggagaggatggtcctcctggtccccctggtccctcgggtcctcaaggcttg
gctggtcagcgcggtattgttggtctgcctggacagcgaggtgaaagaggcttccctggt
cttcccggaccctctggtgagccaggaaaacagggagctgctggtggtgctggagaccgt
ggaccccccggtcctgttggaccccctggactcactggaccagcaggagaacctggcagg
gagggcaaccctggatctgacggacctcctggtagagatggtgctgctggaatcaagggt
gatcgtggtagcactggtcctgcaggtgcccctggtgctccaggcgctcctggcgctcct
ggtcctgtgggccccactggcaagcagggtgacagaggacagcccggtgcacaaggacct
gctggacctccaggacctgctggagccagaggaatgcctggaccccaaggaccccgtggt
gacaaaggggaagcaggagaatctggtgagagaggacagaagggacacagaggtttcact
ggtttgcagggtcttccaggacccccaggtcaagctggagatcagggcgctaccggacct
gctggaccttctggacaaagaggactacctggcccagttggccctgctggaaaggatggt
gcgaatggtctgccaggacccattgggcctcctggacctcgtggtcgctctggagagaca
ggcccagctggtcctcctggaaatcccggaccccctggtcctccaggtccccctggccca
ggcatcgacatgtctgcttttgctggtctgggtcagactgagaaatccccagatcctctc
aggtacatgagggctgaccaggctgccggaaatctccgtcagcatgatgcagaggtggac
gccacactcaaatctctcaacaatcagattgagaacatccgcagcccagagggatccaag
aagaatcccgcacgcacctgcagagatctgaagctttgccatcccgactggaagagcggt
gagtactggattgatccgaatcaaggctgcacagtagatgcaatcaaggtcttctgcaac
atggagacaggggagtcctgcgtgtaccctaaacctactagcataccacgcaagaactgg
tggtccagcaagagcagggaccgtaaacacgtctggttcggagagacaatgaatggagga
ttccacttcagctatggtgacgacagcctagcgcccaacactgctgccattcagatgact
ttcctgagactgctgtccactgaggcctctcaaaacctcacctaccactgtaagaacagc
gtggcctacttggatgcttcaacaggcaacctgaagaaggccgtgctgctccagggctcc
aatgacgtggagatcagagccgagggtaacagccgcttcacttacagtgtcatggaagac
ggctgcacgaaacacacaggacagtggggcaagacagtgatcgaatacaggtcgcagaag
acctctcgtctgcccattgtggacattgctcccatggacatcggtggagtagagcaggag
tttggagttgacgtcgggccagtgtgctttttgtaa
DBGET
integrated database retrieval system
