KEGG   Telmatherina bonti: 306759350
Entry
306759350         CDS       T12083                                 
Symbol
rfc4
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
tbt  Telmatherina bonti
Pathway
tbt03030  DNA replication
tbt03410  Base excision repair
tbt03420  Nucleotide excision repair
tbt03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tbt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    306759350 (rfc4)
   03410 Base excision repair
    306759350 (rfc4)
   03420 Nucleotide excision repair
    306759350 (rfc4)
   03430 Mismatch repair
    306759350 (rfc4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tbt03032]
    306759350 (rfc4)
   03036 Chromosome and associated proteins [BR:tbt03036]
    306759350 (rfc4)
   03400 DNA repair and recombination proteins [BR:tbt03400]
    306759350 (rfc4)
DNA replication proteins [BR:tbt03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    306759350 (rfc4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    306759350 (rfc4)
Chromosome and associated proteins [BR:tbt03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    306759350 (rfc4)
DNA repair and recombination proteins [BR:tbt03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     306759350 (rfc4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    306759350 (rfc4)
SSDB
Motif
Pfam: Rep_fac_C AAA RCF1-5-like_lid DNA_pol3_delta2 AAA_lid_RFC1 Rad17 AAA_assoc_2 AAA_11 AAA_16 AAA_22 Mg_chelatase Gp44_lid AAA_30 DUF815 SLFN-g3_helicase Cdc6_lid RuvB_N AAA_14 DNAX_ATPase_lid AAA_19 AAA_24 ResIII DNA_pol3_gamma3 Kinesin DUF2760 AAA_7 AAA_28 AAA_5
Other DBs
NCBI-GeneID: 306759350
NCBI-ProteinID: XP_079101092
LinkDB
Position
8:complement(36574199..36584732)
AA seq 357 aa
MQAFLKGATVQTSKLQKDKTKAGPSGEKKAKAVPWVEKYRPKCVDEVAFQEEVVAVLKKS
LEGADLPNLLFYGPPGTGKTSTILAAARELFGPDLYRQRVLELNASDERGIQVIREKVKN
FAQLTVSGSRPDGKPCPPFKIIILDEADSMTGPAQAALRRSMEKESRTTRFCLICNYISR
IIEPLTSRCSKFRFKPLANQIQEQRLLDICEKENLKYTKESIAALVRVSEGDLRKAITFL
QSAARLNADKEITDQTVTEIAGVVPSKMIDDLFQTSSRGTFEKLEVVVRRMMEDGYAATQ
ILNQLHDAVIEQDLKDEQKSAIAEKMAVVSKCLSDGADEYLQMLSLCSVIMQQASHG
NT seq 1074 nt   +upstreamnt  +downstreamnt
atgcaggcctttctgaaaggagcaactgtccaaacaagcaaacttcagaaggacaagacc
aaagcaggaccaagcggagagaagaaggctaaagctgttccctgggtcgagaaataccga
ccaaagtgtgttgatgaggtggcgttccaggaggaggttgttgctgtgctgaagaagtct
ttggaaggagccgatcttcccaacctgctcttctacggccctcctgggacgggcaagacg
tccaccatcttagcagctgccagggagcttttcggtccggacctgtacagacagagggtg
ctggagctgaacgcctcggacgaacgaggcatccaggtcatcagagagaaagtgaagaac
ttcgctcagctcaccgtgtcggggagtcgtccagatgggaagccgtgtcctcccttcaag
atcatcatcctggatgaggcggactcgatgacgggaccggcgcaggcggccctcaggcgc
tccatggagaaagagtcccgcaccacccgcttctgcctcatctgtaactacatcagcaga
atcatcgagcctctgacctccagatgctccaagtttcgtttcaaacctttagccaatcag
atccaagagcagcgtctgctggacatctgcgagaaggagaacctgaagtacaccaaggag
agcatcgcggcgctggtgcgggtgtcggagggggatctacggaaagccatcacgtttctt
cagagcgccgctcgactcaatgctgacaaagaaatcaccgatcagaccgtcactgaaatc
gcaggggttgtcccgtccaagatgatcgacgacctgttccagaccagttctagaggaacg
tttgagaaactggaggtcgtggtgagaaggatgatggaggacggatacgcggccacacag
atcctgaatcagctccacgatgccgtcatagagcaggacctcaaggacgagcagaagtcc
gccatcgctgagaagatggcggttgtgagtaagtgcctgtcagacggagcggatgaatac
ctccagatgttgagtttgtgttcagtcatcatgcagcaggcctcccacggttag

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