KEGG   Telmatherina bonti: 306764609
Entry
306764609         CDS       T12083                                 
Symbol
rfc5
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
tbt  Telmatherina bonti
Pathway
tbt03030  DNA replication
tbt03410  Base excision repair
tbt03420  Nucleotide excision repair
tbt03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tbt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    306764609 (rfc5)
   03410 Base excision repair
    306764609 (rfc5)
   03420 Nucleotide excision repair
    306764609 (rfc5)
   03430 Mismatch repair
    306764609 (rfc5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tbt03032]
    306764609 (rfc5)
   03036 Chromosome and associated proteins [BR:tbt03036]
    306764609 (rfc5)
   03400 DNA repair and recombination proteins [BR:tbt03400]
    306764609 (rfc5)
DNA replication proteins [BR:tbt03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    306764609 (rfc5)
  DNA Replication Termination Factors
   ELG1-RFC complex
    306764609 (rfc5)
Chromosome and associated proteins [BR:tbt03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    306764609 (rfc5)
DNA repair and recombination proteins [BR:tbt03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     306764609 (rfc5)
  Check point factors
   HRAD17(Rad24)-RFC complex
    306764609 (rfc5)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 AAA_11 RCF1-5-like_lid AAA_22 RuvB_N DEAD AAA_lid_RFC1 AAA_14 AAA_24 ResIII AAA_16 DUF815 AAA_assoc_2 PhoH AAA_7 nSTAND_NTPase5 AAA_19 AAA_30 AAA_5 ATPase_2 TIP49 AAA_2 Thioredoxin_6 nSTAND3 DNAX_ATPase_lid DUF4119
Other DBs
NCBI-GeneID: 306764609
NCBI-ProteinID: XP_079107916
LinkDB
Position
13:complement(<8899114..8904949)
AA seq 335 aa
MASTSKTSLQSKNLPWVEKYRPQTLDDLISHKDILSTIQRFISEDKLPHLLFYGPPGTGK
TSTILACARQLYKDKEFNSMVLELNASDDRGIDVVRGAILSFASTRTIFRKGFKLVILDE
ADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPDQMIPRL
EHVIEQESIDVTPDGMKAVVTLSSGDMRRSLNILQSTSMAYGKVTENTVYTCTGHPLRSD
IANILDWCLNKDFTAAYKQILELKTLKGLALQDILTEVHLLIHRVDFPPAIRMGLLIKLA
DIEHRLASGTNEKIQLSSMVAAFQAVRNLVVSEAS
NT seq 1008 nt   +upstreamnt  +downstreamnt
atggcgtctacaagtaaaacatctttacagagcaaaaacttaccatgggttgaaaaatac
agaccccaaacacttgatgatttaatttcacacaaagatattctgagtaccattcagagg
ttcatcagtgaagacaagcttccccacctccttttctacggcccacctggaacaggtaaa
acctccacaatcctcgcctgtgctcgacagctgtacaaggacaaagagttcaactccatg
gtgttagagctgaatgcatcagatgaccgaggcattgatgttgtgcgaggtgctattctg
agttttgccagcaccagaaccatcttcaggaagggcttcaagttggtgatactggacgaa
gccgatgccatgacccaggatgcccagaatgcattgcggcgagtgatcgagaagttcaca
gaaaacaccagattctgtctcatctgcaactacctctccaagatcatcccagccctgcag
tctcgctgcaccaggttccgctttggcccgctgtctccggatcagatgatccctcggctg
gagcacgttatcgagcaggagagcattgacgtcactccagatggcatgaaggctgtcgtg
accttatcatctggtgatatgagaaggtcactcaacatcctgcagagcaccagcatggcg
tacggaaaggtcacagaaaacactgtgtacacctgcacgggccaccccctccgctcggat
atagccaacatcctcgactggtgcctcaacaaagacttcacagcagcatacaaacaaatc
ctagagctgaagactctaaaaggtttggctctgcaggatatcctcacagaggtgcatctg
ctcattcaccgagtggacttccctccagctattcggatgggtctgctaatcaaattagct
gacatagaacaccggctcgcttcagggaccaacgagaagatccagctgagctccatggtg
gcagcgttccaggcagtgagaaacctagtggtcagcgaggcctcttaa

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