Telmatherina bonti: 306770329
Help
Entry
306770329 CDS
T12083
Symbol
skic2
Name
(RefSeq) superkiller complex protein 2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
tbt Telmatherina bonti
Pathway
tbt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tbt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
306770329 (skic2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tbt03019
]
306770329 (skic2)
Enzymes [BR:
tbt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
306770329 (skic2)
Messenger RNA biogenesis [BR:
tbt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
306770329 (skic2)
mRNA degradation factors
3'-5' decay
Ski complex
306770329 (skic2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
Helicase_C
DEXQc_Suv3
ResIII
MTR4-like_stalk
DUF3516
Motif
Other DBs
NCBI-GeneID:
306770329
NCBI-ProteinID:
XP_079115312
LinkDB
All DBs
Position
19:14939860..14965974
Genome browser
AA seq
1246 aa
AA seq
DB search
MERINVPSVGPMDLPMSLLEMGCSGRFELITHPVPGQPLPPQSTLPHGLPPTSLNLETEV
EKQFLRDPAWLPIHDTDFAFQKFLKVTQRKANVNSLLNCSPSPLHSGLSVVRDPTTGMLL
DFTEVLVENTGLSAKNSLSLQRQPGPPSESLRGSNTNYPFLPGGMEELTLDQIKKKSNLE
EEIDFENDLLKVAPGLKAGMDFTNNEDKIAKAEVNLMSLLSTPDNITDLQPEAEEKDEGK
ESEEAPKLPRTNSLEDLGIKDAASSSTPLETGKGEKSKPKENSEEKKKWAIPVDTTSPCE
DFYKRIPNPAFKWPFELDVFQKQAVLRLEAHDSVFVAAHTSAGKTVVAEYAIALSQKHMT
RTIYTSPIKALSNQKFRDFKNTFGDVGLLTGDVQLSPESSCLIMTTEILRSMLYNGSEVI
RDLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFSEWIGRIKKRH
IYVISTTKRPVPLEHYLYTGNSTKTQKEKFLLLDATGNFLTKGYYAAVEAKKERTSKHAQ
SFGTKNTSQNTSASQDRSVWLTLLHFLSQQQQTPVVAFTFSRTRCDENARSLGSMDLTTS
IEKAEIHSFFQKSLSRLRGGDRQLPQILLMRDLLKRGIAVHHSGILPILKEVIEMLFSRG
LVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGLDATGT
VIILCKAGVHNMADLHVMMLGKPTVLQSQFRLTYTMILNLLRVEALRVTDMMRRSFSESH
RDTQAHEKRISQLKQSLSSLPPLDTEGQLSDLMPYYHTVTELRTTTEALQQAILESVNGL
KALSVGRVVVVNNKQHLNALGVILQVSNDAVNRTFTALIICEKGNEEGEGKGNDYTAFPH
LCNTALFIPDGPCSHTVQKLKLQDISGITVKTLKVIPERIIDNYNKRQQPRFKHDPPGQA
ISTATQELLRLAEANPDGIATLDPVNDLQLKSVDVVENTMRLRVLQDSLRSFNCIHSPTF
AEQFARVKERMSVQEELDRLMFLVSDQSLTLLPEYHQRIEVLQSLQYVDGSGAVQLKGRV
ASQISSHELLLTELLFENALSLLAPEESAALLSCLVFTQNTQVEPHITNTLKEGIDRVLS
VAKRIGELQQDCGIPQTAEEFVGQFKFGLTEVVYCWARGMPFADIALLTDVQEGTVVRCI
QRLDEVLKEVRQAARIVGDSVLGSKMEKASLAIRRDIVFTASLYTH
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atggaaagaataaacgtgccctctgtgggccccatggacctgccaatgtccctgttggag
atgggctgctctggcaggtttgagctcataacacaccctgtgcctggccagccgctacct
ccacagagcacgcttccccatgggcttccaccaaccagcctgaacctggagacggaagta
gagaaacagtttttacgggaccctgcctggcttcctattcatgacacagactttgccttt
cagaagtttctcaaagtgacccagaggaaggcgaatgtcaactctttacttaactgctct
ccatctcctcttcactctggactctcagtagtcagagatccaaccactgggatgctgctg
gactttacagaggtgttagtggagaacaccggcctgtcagccaaaaactcgctgtcattg
cagcgacaacctggacctccttcagagagccttcgaggaagcaacactaactatccattc
ctcccaggcggaatggaagaactcactctggaccagattaagaaaaagtcaaatctagag
gaggaaatagactttgagaatgatttgctgaaagtcgccccaggacttaaagccgggatg
gattttactaacaacgaagacaaaatagcaaaggcagaggtcaacctcatgtctctcttg
tccacaccggacaacatcactgatcttcagcctgaggctgaggagaaggatgaaggcaaa
gaaagtgaagaagcccccaaacttcccagaacaaacagtcttgaagacttgggcatcaag
gatgctgcgtcatcctcaactcccttagagacaggaaaaggtgagaaatcaaaaccaaaa
gaaaactctgaagagaaaaagaaatgggccattcctgtggacacaacgtcaccctgtgaa
gatttctataaacgcatccccaacccagcattcaagtggccctttgagctggatgttttc
cagaaacaggctgtgctgaggctagaggctcatgactccgtatttgtagctgcacacaca
tcagctggcaaaacagtggtggctgagtacgccatcgctctctcacagaaacacatgacc
aggaccatctacacatctcctatcaaggctttgtccaatcagaagttcagagacttcaaa
aacacctttggagatgttggactccttacgggtgacgtccagctcagtcctgaatcttcc
tgtctcatcatgaccacagagatcctcaggtctatgctgtataacggctcagaagtcatc
cgagacttggagtgggtgattttcgacgaggttcactacatcaacgatgcagaaagaggt
gttgtgtgggaagaagtcttgattatgcttcctgatcatgtcagtatcattctcctcagc
gctactgtgccaaatgctctggaattcagcgagtggatcggtcgtatcaagaagaggcat
atttatgtgatcagcacaacaaagaggcctgtcccgctggagcattacctgtacactgga
aacagcaccaagactcagaaagagaagtttttacttttagatgcgacaggaaacttcctg
actaaaggatattatgcagctgttgaggctaaaaaggaacgcactagtaaacatgcacaa
tcgtttggcactaaaaatacgtcgcaaaacacttcagccagtcaggaccgatccgtgtgg
ctcaccttgctgcacttcctgtcccagcagcagcaaaccccagtggttgcattcaccttc
tctcggacacggtgcgacgagaacgcccgctcgctgggctccatggaccttaccacctcc
atagagaaggcagagatccactctttcttccagaagagcctcagtcgcctgcgaggagga
gaccggcagcttcctcagatcttgctcatgagggacctgctgaagagaggcattgcagtc
catcatagcgggatcctgccaatcttgaaggaagtcattgaaatgcttttttcacgaggt
ctcgtaaaggtgctgtttgccaccgagacgtttgcgatgggagtaaacatgcccgccagg
actgttgttttcgacagcatcaggaagcacgacgggactggctttagaaatctgctgcca
ggtgagtacattcagatggcgggccgagcgggaaggagaggtctggatgccacaggcacc
gtgatcatactgtgtaaggccggcgtgcacaacatggcagatctgcatgtcatgatgctg
ggtaagcctaccgtcctccagtcccagttcagactgacctacactatgattctcaacctg
ctgcgagtagaagctctgcgagtgactgacatgatgagaaggagcttctctgaaagccat
agagacactcaggcacacgaaaagaggatcagtcagctgaagcagtcgttgtcctctctc
cctcctctggacaccgagggccagctgtcagacttgatgccttactaccacactgtgacg
gagctgcgaaccaccacagaagccctccagcaagccatcctggaatctgtgaacggactg
aaagcgctttctgtaggtcgagttgtggtggttaacaacaagcagcatctcaacgcatta
ggagttatcctgcaggtgtccaatgatgctgtgaatcgtacttttacggctctcattatc
tgtgagaagggcaatgaggaaggggagggaaaaggcaacgactacacagcttttccacac
ctctgcaacaccgccctgttcatacccgacggcccgtgcagccacacagtgcagaagctg
aagcttcaggacatctcgggcatcacagtgaaaaccctcaaagtgattcccgaaagaatc
atcgataactacaacaagagacaacaaccccgattcaaacatgaccctcctggccaagcc
atttccacggcaacacaggagctcttgcggttagccgaggccaaccccgatggcatagcc
actctcgacccagtgaacgacctccagctgaagagcgtggacgtggttgagaacaccatg
aggctccgtgtgctacaagacagcctgaggagtttcaactgcatccactctcctactttt
gcagagcagtttgctcgggttaaggagaggatgagtgtgcaggaggagctggaccggctg
atgttcctggtgtccgatcagtctctgactctgctgcctgaataccaccagaggatagag
gtccttcagtctctccagtacgtggacggcagcggggcggtgcagctgaaaggccgagta
gcttctcagatcagcagccacgagctgctgctgaccgagctgctgtttgagaacgccctg
agcctgctggcacccgaggagagcgccgccctgctgtcctgcttggtcttcactcagaac
actcaggtggagccgcacattaccaacacgctcaaggagggcatcgatcgagtgctgtca
gtagctaagcgaatcggggagctgcagcaggattgtgggataccgcagacagccgaggag
tttgtaggccagttcaagtttggcctgactgaggtggtgtactgctgggccagaggcatg
ccttttgctgacatcgccctgctgacagacgtccaggagggcacggtggtccgctgcatc
cagcgcctggacgaggtgctgaaggaggtgcgacaggccgcgcgcatagtgggagactcc
gtcctggggagcaaaatggaaaaggcctccttggccatccgcagggacattgtcttcacc
gcctccctctacacccactga
DBGET
integrated database retrieval system
