Thermomonas brevis: H9L17_12065
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Entry
H9L17_12065 CDS
T06816
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tbv
Thermomonas brevis
Pathway
tbv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tbv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
H9L17_12065 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tbv03021
]
H9L17_12065 (rpoC)
03400 DNA repair and recombination proteins [BR:
tbv03400
]
H9L17_12065 (rpoC)
Enzymes [BR:
tbv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
H9L17_12065 (rpoC)
Transcription machinery [BR:
tbv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
H9L17_12065 (rpoC)
DNA repair and recombination proteins [BR:
tbv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
H9L17_12065 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QNN45915
UniProt:
A0A7G9QRE0
LinkDB
All DBs
Position
2608953..2613143
Genome browser
AA seq
1396 aa
AA seq
DB search
MKDLLNLFNQQRQTLDFDAIKIALASPDLIRSWSYGEVKKPETINYRTFKPERDGLFCAA
IFGPIKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERILYFEAFVVTEPGLTPMERGQLLTEEQFLQARQEHGEDFDAAM
GAEAVYDLLRTIDLQSEMVQLKEEIASTGSETKLKRLTKRIKLIEAFVESGNRPEWMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELNAPDIIVRNEKRMLQ
ESVDALMDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPY
LKLHQCGLPKKMALELFKPFIFAKLQLRGLATTIKAAKKLVEREEAEVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMASNNILSPANGEPIIVPSQDVVLGLYYMTRALENKAGEGMVFANIAEVKRAYDNR
VVQLHAKCKVRITETVVAEDGSRSQQTSIVDTTVGRALLREILPEGLPFALANTELTKKN
ISRLINSCYRMLGLKDTVVFADKLMYTGFAYATRAGVSIGIDDMVIPNEKKGILDEAEAE
VLEIQQQYQSGLVTGGERYNKVVDIWSRTNERVAKAMMDTIGTEKVVNAKGETIDQKSMN
SIYIMADSGARGSQAQIRQLAGMRGLMAKPDGSIIETPITSNFREGLNVQQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITETDCGTLNGLTLTPIVEGGDVVEPLKDRVL
GRIVAEDVFLPGNDEDPFITRNTLIDEQWAIKLEEAGVQVIKVRSTITCMAPFGVCAHCY
GRDLGRGHLVNHGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAAIDNVTVKTTGSVK
FNNLKFVKHADGHLVAVSRSGELSVLDNHGRERERYKLPYGATLQVQDGGEVKAGQTVAN
WDPHNHPIVSEVAGFVRFVDFVDGVTVIEKLDELTGLASREITDPKRRGSQGKDLRPLVR
IVDKDGKDLNIPGTDLPAQYLLPPRSVVNLQHGAAVGVGDVVAKIPQEASKTRDITGGLP
RVADLFEARKPKDPAILAERSGVISFGKDTKGKQRLIIKGPDGEEHEELIPKYRQIIVFE
GEHVEKGETVVDGEPSPQDILRLKGVEELAAYLVKEIQDVYRLQGVKINDKHIEVIIRQM
LRKVEIVDQGDSKFLNGEQVERQRAIEENDRLSRKNEILAKVEPVLLGITKASLATESFI
SSASFQETTRVLTEAAVRGTRDTLRGLKENVIVGRLIPAGTGLAYHSQRRKNASGLTEAE
MATLAGEPAEAESAAE
NT seq
4191 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttgctcaacctcttcaaccagcagcgccagacgctggacttcgacgcgatc
aagatcgcgctggcttcgcccgacctgatccgctcgtggtcgtacggcgaagtgaagaag
ccggaaaccatcaactaccgtaccttcaagccggagcgcgacggcctgttctgcgccgcc
atcttcggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagcac
cgcggcgtggtctgcgagaagtgcggcaccgaagtgaccctggccaaggtgcgccgcgag
cgcatgggccacatcgacctggcctcgccggtcgcgcacatctggttcctcaagtcgctg
ccctcgcgcatcggcctgatgctggacatgaccctgcgcgacatcgagcgcatcctgtac
ttcgaagcgttcgtcgtgaccgagccgggcctgaccccgatggagcgcggccagctgctg
accgaagaacagttcctgcaggcgcgccaggagcacggcgaagacttcgacgcggcgatg
ggcgcggaagccgtctacgacctgctgcgcacgatcgacctgcagagcgagatggtgcag
ctgaaggaggagatcgcctccaccggcagcgagaccaagctcaagcgcctgaccaagcgg
atcaagctgatcgaggccttcgtcgaatccggcaaccgcccggagtggatggtcatgacc
gtcctgccggtgctgccgccggatctgcgtccgctggtcccgctggatggcggccgcttc
gcgacctccgacctgaacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctgcgc
cgcctgctggagctcaacgcgcccgacatcatcgtgcgcaacgagaagcgcatgctgcag
gaatccgttgacgccctgatggacaacggccgccgcggtcgcgccatcaccggcaccaac
aagcgcccgctgaagtcgctggccgacatgatcaagggcaagcagggccgcttccgccag
aacctgctcggcaagcgcgtggactactccggccgttcggtcatcgtggtcggcccgtac
ctcaagctgcaccagtgcggcctgccgaagaagatggcgctggagctgttcaagcccttc
atcttcgccaagctgcagctgcgcggcctcgccaccaccatcaaggcggcgaagaagctg
gtcgagcgcgaagaggccgaggtgtgggacatcctcgaagaggtgatccgcgagcatccg
gtgctgctgaaccgcgccccgaccctgcaccgcctcggcatccaggcgttcgagccggtg
ctgatcgaaggcaaggcgatccagctgcatccgctggtctgcaccgcgttcaacgccgac
ttcgacggcgaccagatggccgtgcacgtgccgctgtcgctggaagcgcagctggaagcg
cgcgcgctgatgatggcgtccaacaacatcctgtcgccggccaacggcgagccgatcatc
gtgccgtcgcaggacgtggtgctgggcttgtactacatgacccgcgcgctggagaacaag
gcgggcgagggcatggtgttcgccaacatcgccgaggtgaagcgcgcctacgacaaccgc
gtggtgcaactgcacgccaagtgcaaggtgcgcatcaccgagaccgtggtggccgaggat
ggcagccgcagccagcagacctcgatcgtggacaccacggtcggtcgcgcgttgctgcgc
gagatcctgccggaaggtctgccgttcgcgctggccaacaccgagctgaccaagaagaac
atcagccgcctgatcaacagctgctaccgcatgctgggcctgaaggacacggtggtgttc
gccgacaagctgatgtacaccggcttcgcctacgcgacccgcgccggcgtgtcgatcggc
atcgacgacatggtcatcccgaacgagaagaagggcatcctcgacgaggccgaagccgaa
gtgctggaaatccagcagcagtaccagagcggcctggtcaccggcggcgagcgctacaac
aaggtcgtggacatctggtcgcgcaccaacgagcgcgtggccaaggcgatgatggacacc
atcggcaccgagaaggtggtcaatgccaagggcgagaccatcgaccagaagtcgatgaac
tcgatctacatcatggccgactccggcgcgcgtggttcgcaggcgcagatccgtcagctc
gccggcatgcgcggcctgatggcgaagccggacggctcgatcatcgaaacgccgatcacc
tcgaacttccgcgaaggcctgaacgtccagcagtacttcatctcgacccacggtgcccgc
aagggcctcgcggataccgcgctgaagaccgcgaactccggctacctcacccgccgtctg
gtggacgtggcgcaggacgtggtcatcaccgagaccgactgcggcacgctcaacggcctg
accctgacgcctatcgtggaaggcggcgacgtggtcgagccgctgaaggatcgcgtgctg
ggccgcatcgtggccgaggacgtgttcctgccgggcaacgacgaagatccgttcatcacc
cgcaacaccctgatcgacgaacagtgggcgatcaagctggaagaagcgggcgtgcaggtc
atcaaggtgcgcagcaccatcacctgcatggcgccgttcggcgtgtgcgcgcactgctac
ggccgcgacctcggccgtggtcacctggtcaaccacggtgaagccgtgggcgtggtcgcc
gcgcagtcgatcggcgagccgggcacgcagctgacgatgcgcaccttccacatcggcggt
gcggcgtcgcgtgcggcggccatcgacaacgtgacggtcaagaccaccggctcggtcaag
ttcaacaacctgaagttcgtcaagcacgccgacggccatctggtcgcggtgtcgcgttcc
ggcgaactgtcggtgctggacaaccacggccgcgagcgcgagcgctacaagctgccctac
ggcgccaccctgcaggtgcaggacggcggcgaagtgaaggccggccagaccgtcgccaac
tgggatccgcacaaccacccgatcgtctcggaagtggccggtttcgtgcgcttcgtcgat
ttcgtcgacggcgtcaccgtgatcgagaagctggacgaactgaccggcctcgcctcgcgc
gaaatcaccgatccgaagcgtcgtggctcgcagggcaaggacctgcgtccgctggtgcgc
atcgtggacaaggacggcaaggatctgaacatccccggcaccgacctgccggcgcagtac
ctgctgccgccgcgctcggtggtcaacctgcagcacggcgccgccgtgggcgtgggcgac
gtggtcgcgaagatcccgcaggaagcctccaagacccgcgacatcaccggcggtctgccg
cgcgtggccgacctgttcgaagcgcgcaagccgaaggacccggcgatcctcgccgagcgt
tcgggcgtgatctcgttcggcaaggacaccaagggcaagcagcgcctgatcatcaagggg
ccggacggcgaggagcacgaggagctgatcccgaagtaccgccagatcatcgtgttcgaa
ggcgagcacgtggagaagggcgagaccgtggtggacggcgagccgagcccgcaggacatc
ctgcgcctgaagggcgtcgaggagctggccgcttatctggtcaaggaaatccaggacgtc
taccgcctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcatccgccagatg
ctgcgcaaggtcgaaatcgtcgatcagggcgactcgaagttcctcaacggcgagcaggtc
gagcgccagcgcgccatcgaggaaaacgatcgcctgtcgcgcaagaacgaaatcctagcg
aaggtcgaaccggtactgctcggcatcaccaaggcttcgcttgcgaccgagtcgttcatc
tcgtccgcgtccttccaggaaaccactcgcgtgctgaccgaggctgccgtccgcggcacc
cgcgacaccctgcgcggcctgaaggagaacgtgatcgtcggccgcctgatcccggcgggc
accggtctggcctaccacagccagcgccgcaagaacgcttcgggcctgaccgaggcggaa
atggcaacgctggccggcgagccggccgaggccgaatccgccgcggagtaa
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integrated database retrieval system
