Trueperella bialowiezensis: NCTC13354_00147
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Entry
NCTC13354_00147 CDS
T05959
Symbol
deaD
Name
(GenBank) Cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tbw
Trueperella bialowiezensis
Pathway
tbw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tbw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC13354_00147 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tbw03019
]
NCTC13354_00147 (deaD)
03009 Ribosome biogenesis [BR:
tbw03009
]
NCTC13354_00147 (deaD)
Enzymes [BR:
tbw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC13354_00147 (deaD)
Messenger RNA biogenesis [BR:
tbw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC13354_00147 (deaD)
Ribosome biogenesis [BR:
tbw03009
]
Prokaryotic type
rRNA helicases
NCTC13354_00147 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
adh_short
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
VEI12468
UniProt:
A0A448PBY6
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All DBs
Position
1:153569..155341
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AA seq
590 aa
AA seq
DB search
MTTFAGLNLPKNILSAITKMGYETPTPIQEQAIPPLLDGRDVVGVAQTGTGKTAAFALPM
LTRVDPELEQVQALVLAPTRELAVQGADAIDEFAASTTGLRVVAVYGGAPYGPQIGKIRD
GAQVVVGTPGRIMDLIDRGALQLDGVRYFVLDEADEMLRMGFAEDVEKIAADLPNERVTA
LFSATMPKQIRAVAQNHMNDPLEITVTPPASTIDTITQTYAVVPSRHKIGALARVLATTD
ADAAIVFVRTRATAEELAIELNTRGVQAATLSGDVQQRDREKLVERLRGGTLDVLVATDV
AARGLDVERIGLVVNFDVPREAETYVHRIGRTGRAGREGTSLTFVTPKERSRLRRIEKIT
GATLTEVSLPTPAEVSGLRARRLVESAKERHAAGRLSVYREIIEEFRTEQLASDSPISPE
DLIASLLALGVRDPGPSPDDEPEHLTVSFDDDRPRRDERRGKRTGGKPRTFDQDGTMYRV
EVGKRDGVSPGAIVGALTNEGGLSGSQLGRIDIYPTFSLVEIDREIDSRTQKRIARARVS
GRTLNISRDTGPRRSDERAVRKYRADRKFGDERRARKARFDKGRKPRHWR
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgacaacttttgctgggctcaatttgcccaaaaacattctgtccgccattacaaagatg
ggctacgaaacgcctaccccgatccaagagcaggccattccgccactgttggacgggcgc
gacgtcgttggcgtcgcccaaaccggaacgggtaagaccgccgcgtttgccctccccatg
ctcacccgagtcgacccagaattggaacaggtgcaggcactcgtcttggcacccacgcgc
gaacttgcggtacagggagccgacgccattgacgaattcgcagcctcgaccacggggcta
cgagttgtcgccgtctacggcggtgctccttacggtccgcaaatcggcaagattcgcgac
ggcgcccaggtcgtcgtcggcacgcccggccggatcatggatctcatcgaccgcggggct
ttacagctcgacggcgtgcgctacttcgtgctcgacgaggccgatgagatgctccgtatg
ggatttgctgaagacgtcgaaaagatcgctgcggatctgcccaatgagcgcgtcactgcc
ctgttttcggccaccatgcccaaacagatccgcgcagtcgcgcaaaaccacatgaacgat
ccgttagaaatcacggtcactcccccagcctcgacgatcgacacgattacgcagacctac
gccgtcgttccctcccgccataagatcggtgcactcgcccgcgtgctcgctacaacggat
gcggacgcggccatcgtgttcgtgcgcacccgtgccaccgcagaagaactcgctatcgag
ctcaacacccgcggcgtgcaggccgccaccctgtccggtgacgtgcagcagcgcgaccga
gagaaactcgtcgagcgtctacgtggcggtacccttgacgtgcttgtggctaccgacgtc
gcagcccgcgggctcgacgtggaacgcatcggcctcgtcgtcaatttcgacgtgccgcgc
gaagccgaaacatacgtgcatcgaatcggccgcacgggccgagccggccgtgaaggtacg
tcgctcacgttcgtcacaccgaaagaacgctcccggctgcgccgcatcgaaaagatcact
ggtgccacactcaccgaggtcagcttgccgacccccgctgaggtgtccggtttacgggct
cgacgccttgtggaatctgcgaaagaacgtcacgcagctggaaggctatctgtgtaccgc
gagatcatcgaagaatttcgcaccgagcaactcgcctcagatagcccgatctcgcccgaa
gacctcattgcctcgttgttggcacttggcgtgcgcgatccgggaccaagcccggatgat
gagcccgaacatctgacggtctcattcgacgacgaccgcccgcgccgtgacgagcggcga
ggcaaacgtaccggcggtaagccgcgcacgtttgatcaagatggcacgatgtaccgcgtc
gaagttggcaagcgcgacggcgtctcccccggtgcgatcgtcggcgcgctgacgaacgag
ggcggcctgtctggatcgcagcttggacgcatcgacatctatcccacgttctctctcgta
gaaatcgaccgtgaaatcgactcgcgcacccagaagcgtattgcacgggcacgcgtctcc
gggcggacgctcaacatttcccgcgatactggcccgcgccgatcagacgaacgcgccgtc
cgtaaataccgtgccgaccgtaaattcggcgacgagcgccgggcgcgcaaagcacgtttt
gacaagggccgcaagccccggcattggcgctag
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