Trueperella bialowiezensis: NCTC13354_00565
Help
Entry
NCTC13354_00565 CDS
T05959
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tbw
Trueperella bialowiezensis
Pathway
tbw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tbw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCTC13354_00565 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tbw03021
]
NCTC13354_00565 (rpoC)
03400 DNA repair and recombination proteins [BR:
tbw03400
]
NCTC13354_00565 (rpoC)
Enzymes [BR:
tbw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCTC13354_00565 (rpoC)
Transcription machinery [BR:
tbw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCTC13354_00565 (rpoC)
DNA repair and recombination proteins [BR:
tbw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCTC13354_00565 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
VEI12871
UniProt:
A0A3S4VFB6
LinkDB
All DBs
Position
1:complement(594000..597974)
Genome browser
AA seq
1324 aa
AA seq
DB search
MLDVNLFDQLSISLATSDDVRAWSHGTVTKPETINYRTLKPEKDGLFGEQIFGPTRDWEC
ACGKYKRPRYKGIVCERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDI
APKDLEKVIYFAAYMVTDVDEQRRHDDMATLTAEYELERDNLEKERDAAVEESLKEEERT
LAEAEKAGEDAASIAKIKRTLQANTRRVRTRYENDLKSLEEIWDKFTKMKVGDLEGDEIA
YREMEARWGDYFAAYRGAEAIQRRLRNFDLQAEHDLLVDQIENGTAQRKTRALKRIKVVN
AFLHSKTPPEAMVLDAIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLQRMIDL
NAPEIMVNNEKRMLQEAVDALFDNGRRGRPVQGAGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVIGPTLKLHQCGLPKTMALELFKPFVQKRLVDLELAKNIKAAKRLIERQR
DEVFDVLEEIIQEHPVLLNRAPTLHRLGIQAFEPKLIEGKAIRLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARILMLSANNILKPSDGRPVTVPSQDMIIGLYHLTSQRDDEEGAGR
YFTSVAEAQMAYDLGDLHLNAPCHIRWKADEIVLPRGWKAPEGYEEGDSVLLTTTLGRAL
FNDALPTTFPFVNKTVDKKVLGNIVNELAERYPKVDAAASLDALKEIGFYWGGRSGVTIA
VSDVVAPDTKAEILEKAEERAAKIEQDFQEGNIRDEDRRRDLVALWSEVTDVVADEMRKN
FDDLNNINQMVSSGARGNWMQIRQVAGMRGLVADPKGEIIPRPIKSNYREGLSALEYFTA
THGARKGLADTALRTADSGYLTRRLVDVAQDVIVRESDCGTSRGLKKTIALTDAEGNELR
MADVDGVAREVAQAEVSEDVWASAEVLRAADIDTSVYARTLAKDVTDADGNVLVEAGVDI
GDVALETLLDAGIIEITVRSVLTCDSRVGTCAKCYGRSLATGKLVDIGEAVGIVAAQSIG
EPGTQLTMRTFHTGGAASAEDITQGLPRVQELFEARTPKGEAPIAEASGRLETEELERSR
RLIIKRDDGDEDLTYLVGKRAKLLVPENSHVQVGQQLVEGSVDPKKVLRISGRRVAQLHL
VREVQNVYRSQGVEIHDKHIEVIVRQMLRRVTVLDSGTTSLLPGELVDVSKFETANRAAM
AEGGKPASGRPELMGITKASLATDSWLSAASFQETTKVLTEAALNAKSDPLEGLKENVIL
GKLIPAGTGLEQLRKPKVEPTAEARAEYDQLNTFAGLDAFDDIYGYGQMDDYDTSMGYGY
GLDF
NT seq
3975 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgtcaatctttttgaccagctgtcgatctctctcgcgacgtcggatgacgtg
cgtgcgtggtcgcacggcacagttaccaagcctgaaacgattaattaccgtacgctcaag
ccggagaaggacggcttgttcggcgaacagatttttggtcccactcgcgactgggagtgt
gcttgcggcaagtacaagcgtccgcgttacaagggcattgtgtgtgaacgttgtggcgtt
gaggtcacgcgtgccaaggtgcgcagggagcggatgggccacattgagctggccgcgccg
gtgactcacatttggtacttcaagggtgtgccctcgcgtttgggttacctgttggatatc
gcgccgaaggacctggaaaaggtcatttacttcgctgcatacatggtgaccgacgtcgat
gagcagcgccgtcacgacgacatggcaacgctgaccgccgagtacgagctcgagcgggac
aacctagaaaaggaacgcgacgccgccgtcgaagaatcgctcaaagaggaagagcgtacg
ctcgccgaggccgaaaaagcgggggaggatgcggcgtcgatcgcaaagatcaagcggacg
ctgcaggctaacacgcgccgggtgcgtactcgttacgagaacgacctgaagagtctcgaa
gagatttgggacaagttcaccaagatgaaggtgggcgacttggaaggtgacgagatcgcc
taccgggagatggaagctcgttggggcgactactttgctgcctaccgtggtgctgaagcg
atccagcgtcgtctgcggaatttcgatctacaggctgagcacgatctgctcgttgaccaa
atcgaaaacggtacggctcagcgtaagacgcgcgctctgaagcggatcaaggtggtcaac
gccttcctgcattcgaagactccgccagaggcaatggttctggatgcgattccggttatt
ccgccggatctgcgcccgatggtgcagcttgacggcggacgtttcgcgacgtcggacctc
aacgacctgtaccgtcgcgtcattaaccgcaacaaccgcctccagcgcatgatcgacctg
aacgcgccggagatcatggtcaacaacgaaaagcggatgctgcaggaggccgtggacgcg
ctgttcgacaacggtcgccgtggccgtccagttcagggtgcgggtaaccgtccgctgaag
tcgctgtccgacatgcttaagggtaagcaggggcgtttccgtcagaatctgctcggtaag
cgtgtggactactctggccgttccgtgatcgtgattggcccgaccctcaagcttcaccag
tgtggtctgccgaagacgatggccctcgaactgtttaagccgttcgtgcaaaagcgcctg
gtggatctcgagttggcgaagaatatcaaggctgccaagcgcctgattgagcgtcagcgc
gacgaagtgttcgacgtgctcgaagagattattcaagagcacccggtgctgcttaaccgc
gcacccacgctgcaccgccttggtattcaggcgtttgaaccgaagctgattgaaggtaag
gccatccgcttgcacccgcttgtgtgtgcagcgttcaatgctgactttgacggcgatcag
atggcagttcacctgccgctgtcggttgaagcgcaggctgaggctcgtatcctcatgctg
tcggcgaataatattctcaagccgtcggatggccgcccggttacggttccttcgcaggac
atgattatcggcctgtaccatttgacgagccagcgtgatgatgaggaaggcgccgggcgt
tacttcacgtcggttgcggaagcccagatggcctacgacctgggtgatttgcacctgaac
gcgccgtgccatattcgctggaaggccgacgagatcgttctgccacgcgggtggaaggct
cccgaaggctacgaagaaggcgattctgtcctgttgacgacgacgctcggacgcgccctg
ttcaatgacgcgcttccgacgacgttcccgttcgttaacaagactgttgacaagaaggtt
ctcggcaacattgttaacgagcttgccgagcgttacccgaaggtagacgcagcggcctcg
ctcgatgcgctgaaggaaatcggcttctactggggtggtcgttctggtgtgacgatcgcc
gtgtccgacgtcgtcgcacccgataccaaggcagagatcctggagaaggccgaagagcgt
gccgcgaagatcgaacaggacttccaagaaggtaacattcgtgacgaggatcgccgccgc
gacctggtggcgctgtggtctgaagtgaccgacgtcgtcgccgatgagatgcggaagaac
ttcgacgacctgaacaacatcaaccagatggtgagctcgggtgctcgtggtaactggatg
cagattcgtcaggttgccggtatgcgtggccttgtggctgatccgaagggcgagattatt
ccgcgtccgatcaagtcgaactaccgtgaaggtctgtcggcgctcgagtactttacggcg
acccacggtgcgcgtaagggtctggccgatacggctctgcgtacagccgactcgggttac
ttgacccgtcgtcttgttgacgtggctcaggacgtgatcgtgcgcgagtctgattgcgga
acgtcgcgcgggctgaagaagacgatcgcgttgactgacgccgagggcaacgagttgcgt
atggcagacgttgacggcgtcgcacgtgaggttgcgcaagccgaagtgtctgaggacgtg
tgggcgagcgctgaggtgctgcgtgccgccgacatcgacacatcggtgtacgcgcgtacg
ttggcgaaggacgtgaccgacgcggacggcaacgtgcttgttgaggccggtgttgatatt
ggcgacgtcgcactcgagacgctgcttgacgcgggcattatcgagatcaccgtgcgttcc
gtgctgacctgtgactcgcgcgttggtacgtgtgccaagtgctatggccgttcgcttgcc
acgggcaagctcgtcgatatcggcgaggctgtcggcattgtggccgcccagtcgattggt
gagccgggtacccagctgacgatgcgtaccttccacactggtggtgcggcgtcggcagag
gatatcactcagggtctgccgcgtgtccaggagcttttcgaagctcgtacgccgaagggt
gaggcaccgatcgcggaagcgtccggccgtctcgaaactgaggagttggagcgttcgcgt
aggctgatcatcaagcgtgacgacggcgacgaagacctcacgtacctcgtgggcaagcgt
gccaagctgctcgtgcctgagaattcgcacgtgcaagtcggccagcagctcgttgaaggt
tcggtggacccgaagaaggtcctgcgtatctctggtcggcgcgttgcgcagctgcacctt
gtgcgtgaagtgcagaacgtgtaccgctcgcagggcgtggaaatccacgacaagcacatc
gaggttatcgtgcgccagatgttgcgccgcgtgaccgtgctcgactcgggcaccacatcg
ctgcttccgggtgagcttgtggatgtgtcgaagttcgagaccgcgaaccgtgcagcgatg
gccgagggcggtaagccggcgtcgggccgtccggagctcatgggtatcacgaaggcgtcg
cttgccacggattcgtggctgtcggccgcgtcgttccaggagaccacgaaggtgttgact
gaggcggcactgaacgcgaagtccgatccgcttgaggggctgaaggagaacgtcatcctc
ggtaagctcatcccggccggtactggcttggagcagctgcgtaagccgaaggtggagccg
actgctgaggctcgtgctgagtacgatcagctcaacacgttcgcagggctggatgctttt
gatgacatctatggctatggccagatggacgactatgacacgtccatgggctatggctac
ggcctcgacttctaa
DBGET
integrated database retrieval system
