Trueperella bialowiezensis: NCTC13354_01117
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Entry
NCTC13354_01117 CDS
T05959
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
tbw
Trueperella bialowiezensis
Brite
KEGG Orthology (KO) [BR:
tbw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tbw03019
]
NCTC13354_01117
Enzymes [BR:
tbw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NCTC13354_01117
Messenger RNA biogenesis [BR:
tbw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NCTC13354_01117
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
NACHT
T2SSE
SLFN-g3_helicase
HA2_N
ABC_tran
PhoH
Motif
Other DBs
NCBI-ProteinID:
VEI13402
UniProt:
A0A3S4Z5I1
LinkDB
All DBs
Position
1:complement(1184020..1188708)
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AA seq
1562 aa
AA seq
DB search
MTSHRNPDSSEPHDRAPRRGSRGQRSSRQHRSSQKRRPRGPRPFTPAELEARRAAVPEIS
YPPQLPVSARREDIAAAIRDNQVVIVAGETGSGKTTQLPKICLELGRGITGMIGHTQPRR
IAARSVADRICDELGVELGGAIGYQVRFTEQTSRTTLVKLMTDGILLAETQNDPELRKYD
TIIIDEAHERSLNIDFLLGYLARLLPRRPDLKLIITSATIDSQRFAEHFGRHMHGGGPDC
EAPVIEVSGRTFPVEIRYRPLYDDSATDLSGASAGGRHGGGHATNEGSSLTARGSGMSAT
GSENLTAQGGGRAPGGRRTANEGSSLTARGGGMSATGSASLTARGGGVSATRSAIQERDQ
ITGILEAADELMAEGPGDILVFLSGEGEIRDTEKAFQEELGQRYIEPGGRSSVPNAVEVL
PLFARLSAAEQRRIFQPHNHRRIILATNIAETSLTVPGIRYVIDPGTARISRYSTKTKVQ
RLPIEAISQASANQRSGRSGRVADGIAIRLYSEEDFAVRPEFTEPEIQRTSLASVILQMA
AMNLGSVEDFPFIDPPDMRAVRAGIQLLEEIGALEPVSKHDAGKPDQRTPGNRTTSSHPK
DRGETGRARVVGTGTHVLTETGRTLAKLPIDPRLGRMLLAAVDNGAASEVLVLVAAMSVQ
DVRERPAEFRAQADQLHARFTDRTSDFLAYLNLWRYLRTQQRELSGSAFRRMCRAEYINW
LRFREWQDVVAQLRELLRPLGINLKPIKLPTKDQLRAATEEGKDNSHNQDVARAVVRLGQ
SSDTPAADAIHKSILVGLLSNLGSWDQRTKDYLGARGTRFVIWPGSGLHRRNPEWVMAAE
LVETSRLFARSVARIKPEWVEEVGGHLVKRQYSEPFWSTRMGAAMVHEKVLIYGLPIIAD
RRVLLSKIGTESARELAREMFIRHALVEGQWRAHHVFIKHNKEQLAQAGEVEQRMRQVGL
VADDDDRFTFFDERLPAGIVSAGHFNSWWKKERRKNPELLNFTQEFLLGDTTVSEEDFPS
EWVQGDISLPIEYHFSPGKHADGLTIDVPVTLLPQLTDDGFDWLVPGLLPDLVTATIRAL
PKPVRRNLVPAPDVARDILAVLPPWNDVAHGQPGAPSFREAFTAAARELRGIDIDDGAWA
SVNLPPHLEITFRVRSERGAVLDEGTSIAYLQRELAPQTRSAVESVVKGAVAQALDEARA
ELLRAAEGAGHDQAGGAAAGPGLESGAGTESGAGQAGTDSARPSSAEPNSPRWDAPDSEN
LETWPEQIAELPAVVETQKGRMTVRGYPAFVEVPAPGAAGRTDVNVALQVLAEPAEQVRD
HRRGIIRLLAIDLALPESRVTTRWTGAESLTLAATPYPSTEALVDDLQLAAARNIADRWA
RTADQPLGRLRTRSAYLELRAHARELLEDEVYQLVKTTVRIMQAYGEVDGAIRESSSITL
INTVADVRAHISGLVFNGFISATPEAQLPHLVRYLQAAKIRLDKAASNPAADDSLAWQVA
DVVEQLDAESAEFAAGSYDAGRARTLEQARWMVEELRVSLFAQQLGTAGKVSPQRIRKLL
RR
NT seq
4689 nt
NT seq
+upstream
nt +downstream
nt
atgacgagccaccgtaatccagattcttcggagccccacgaccgcgcgccgcgccgcggc
tcacgtgggcagcgcagttcacgccaacaccgcagttcacagaagcgccgcccgcgcggc
ccacgcccgttcacgcctgcagagcttgaggcacgccgcgcggccgtgcccgagatttct
tatccaccacagttgccggtgtcggcgcgccgggaggacatcgccgcggcaatccgggac
aaccaagtggtgatcgtggctggagaaacggggtcgggtaaaaccacgcagctgccaaag
atctgcctcgagcttggccggggcatcaccggcatgatcgggcacacgcagccgcggcga
attgcggcccgctcggtagccgaccgcatctgcgacgagcttggcgtagaactcggcggc
gctattggctatcaggttcgtttcacggagcagacttcgcgaaccacgctcgtcaagctc
atgactgacggcattcttttggccgaaacccagaacgatcccgagctgcgtaaatacgac
acgatcatcatcgacgaggcgcacgaacgctcactcaacattgatttcttgctcggctac
ctcgctcgcttgctaccccgcaggcccgacctcaaactcatcatcacctcagccaccatt
gattcgcagcgcttcgctgaacatttcggccgccacatgcacggcggtggccctgactgc
gaggccccagtgattgaggtgtcggggcgcacgttccccgtagagattcgctatcgtccg
ctttacgacgacagtgccaccgatctttccggggcgagcgccggtggcagacatggtggc
ggacatgccactaacgagggatcaagcctgaccgcccgaggtagtggtatgtccgccacc
ggctcagaaaacttgaccgcccaaggtggtggccgtgcgcccggtggcagacgtaccgct
aacgagggatcaagcctgaccgcccgaggtggtggtatgtctgccaccggctcagcaagc
ctcactgcccgaggtggcggtgtgtctgccactaggtcagccatccaggagcgcgaccaa
atcactggaatccttgaggctgcagatgagctgatggcggagggccccggcgacattctt
gttttcctttcgggagaaggagaaatccgggataccgagaaggctttccaggaggagctc
ggccagcgctacatcgagccgggtgggcgttcctccgtgccgaacgcggtggaagtgttg
ccgctgttcgcccggctgtcggctgctgagcagaggcgtattttccagccgcataatcac
aggcggattattttggccacgaatatcgcggagacttcgctgaccgtgcctggtattcgt
tacgtgatcgaccccggcaccgcccgcatttcccgctattcgaccaagacgaaggttcag
cgtctgccgattgaggcgatttcgcaggcgtcggcgaatcagcgttcgggtcgttcgggt
agggtcgcggacggcatcgcgatccggctttattctgaggaggatttcgcggtgcgcccg
gagtttactgagccggagattcagcgcacgtcgcttgcgtcggtgattttgcagatggcg
gcgatgaatctgggttccgtcgaagacttcccgtttattgacccgccggatatgcgggcg
gttcgcgctggaatccagctgcttgaggagatcggcgcgcttgaaccggtttcgaagcac
gacgccggaaaacccgaccagcgcacgcctggcaaccgcaccacatccagccaccccaag
gaccgcggtgaaaccggccgggcccgagtggttggcacgggaacgcacgtgctcaccgaa
actggtcgcacgctggccaagcttcctattgatccgcgtcttggccggatgctgctcgcc
gcggtggataacggagcggcgtcggaggtgttggtgctggtggcggcgatgtcggtgcag
gatgtgcgcgagcgcccggccgagttccgcgcgcaggctgaccagttgcatgcccggttc
acggatcgtacgtctgattttctggcctacctgaatttgtggcggtatttgcgcactcag
cagcgtgagctttcgggttcggcgttccgccggatgtgccgggcggagtacatcaattgg
ctgcgtttccgcgagtggcaggatgtcgtcgcccaactgcgtgaactgctccgcccgctt
ggaatcaacctcaagccgatcaaactccccaccaaagaccagctacgtgcagcaacagaa
gagggcaaggacaattcgcataatcaggatgtggcgcgggcggtggttcgcttggggcag
tcgtcggatacgccggcggcggacgcgattcacaagtcgatcctcgtcggtctgctgtct
aatctcggttcatgggatcagcgcacgaaagattacctcggtgctcgcggcacccgcttc
gtcatctggccgggctctggcttgcatcggcgcaaccccgagtgggtgatggccgccgag
ctcgttgaaacctcgcgcctattcgcccggtccgtggctcgcattaagcctgagtgggtg
gaggaggtgggcggtcacctcgtcaaacgccagtattcggagccgttctggtccacccgc
atgggcgcggcgatggttcatgaaaaagtgctgatctacgggctgccgattattgcggat
cggcgcgtgttgctatcgaaaatcggcacggaatccgcccgcgaactcgcacgcgaaatg
tttatccgccacgcgctcgtcgagggccagtggcgcgcccaccacgtattcatcaagcac
aacaaggagcaactcgcgcaggccggcgaggtcgagcagcgcatgcgccaggtggggctt
gttgccgacgacgacgatcgcttcacgttcttcgacgagcgccttccagcgggcatcgtc
tcggccgggcattttaattcgtggtggaagaaggagcgccggaagaacccggagctgttg
aacttcacgcaggagttcctgcttggggatacaaccgtctcggaggaggatttcccgtcc
gagtgggtgcagggcgacatctcgctgccgatcgagtaccacttctcgccgggtaagcac
gcggacgggctgacgatcgacgtgccggtcacgcttttgccacagttgaccgacgacggt
ttcgactggctcgttcccggcctgctgcccgatctcgtgacggccacgattcgcgcgctg
ccgaagccggtgcgccgcaacctcgtaccagcgcccgacgtggctcgcgacatcctcgcc
gtactcccgccgtggaacgacgtggcgcacggccagccgggggcgccgtcgttccgcgag
gcgttcactgctgccgcgcgcgagctgcgtgggatagatatcgacgacggcgcctgggcg
tccgtcaacctgccgccgcatttggagattacgttccgggtgcgatccgagcgcggtgcg
gtgctggacgaggggacgtcgatcgcctacctgcagcgggagctggcgccgcagacccgt
tcggcggtggagtcggtggtcaagggcgctgtggcgcaggctctcgacgaggcccgggcg
gaactgctgcgcgccgcggagggggcaggtcacgatcaggcgggcggcgcggcggccggc
ccaggtttggagtcgggcgcaggcacggagtcgggcgccgggcaggccgggacagattcc
gcacggccaagttccgcggaacctaattctccgcgctgggacgcgcccgattccgagaat
ctggagacctggcctgagcagatcgcggagctgcccgcggtggtcgaaacacaaaagggt
cggatgactgtgcgcgggtatccggcgtttgtggaggtgcctgcgccgggtgcggctggg
cggacggacgtcaacgtcgcgctccaggtactcgcagagccggctgagcaggtgcgcgat
catcgccgcggaatcatccggctgctagctattgatctggctcttccggaatcgcgggtc
accacacggtggacgggcgcggagtcgctcacgctggcggccacgccgtatccgagcacc
gaggcgctcgtggacgaccttcaacttgccgccgcccgcaatatcgccgatcggtgggcg
cggacggcagaccagccactcggacgcctgcgcactcgcagcgcctatctcgagctgcgc
gcccacgcccgggaacttctcgaagacgaggtctatcagctagtgaaaaccacggtacga
atcatgcaggcatatggcgaggtggacggcgcgatccgcgagtccagttcgatcacgctc
atcaacacggtggccgacgtacgtgctcacatctccggtctggtcttcaacggatttatt
tccgcgacgccggaggctcaactcccgcacctcgtgcgctacttacaggccgctaagatc
cgcctcgataaagccgcaagcaacccggccgccgacgattcactcgcctggcaggtcgcc
gacgtcgtcgaacaactcgacgccgagtccgccgagttcgccgccggaagctacgacgcc
ggccgcgcgcgtaccctcgagcaggcgcggtggatggtcgaagaactgcgtgtgtccctc
tttgcccagcaactcggcacggcaggcaaggtctccccgcagcgaatccgcaagctcttg
cgccggtaa
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