Tenericutes bacterium MZ-XQ: BK011_00150
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Entry
BK011_00150 CDS
T05490
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tbz
Tenericutes bacterium MZ-XQ
Pathway
tbz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tbz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BK011_00150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tbz03400
]
BK011_00150
Enzymes [BR:
tbz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BK011_00150
DNA repair and recombination proteins [BR:
tbz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BK011_00150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
TRCF
ResIII
Cas3-like_C_2
UB2H
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AUD64178
UniProt:
A0A2K9ADJ1
LinkDB
All DBs
Position
31179..34595
Genome browser
AA seq
1138 aa
AA seq
DB search
MIDLLKLDDELLKELNKKNKTVYLKSSTDVYNCYLISKRYQEEKETIFVVTANLYEAQKY
YDTLSNINDPDDVLFYPADETLTSMMALGSPEFKSERLYTLKQLMTDDSFIVVTTMQGMS
QRQLKPQDYENSVKHIYKDHTYDLKDLTQFLVYSGYQHSFTVEKPGEFSLRGNILDVFPL
NTEHPYRLDFFDDLLEQIKIFKVEDQRSFAETKHIEIAPIHELFFTDQMKDNAIKKITKH
FEKFDLSEREQEKLNLDIEHIDLRQKLDGLSLYIPFFNETETTIIDFSKTHEIYMIDVHK
MEVNQEHIKDDLDTYAITMNGRAFLSIKYRLDLKDILKHRHIEIDNYGFNNDKGHDLNVS
EVNNYQSNLQLFYSDMIDLVGKYSIYLCVKTTHYLEELKSFLIQKNIPFERQIGSERLVY
VIDVSSHGSFISHNEKIMVIDESELFNYKVRKAIRYRSVLTQSTKIRHVDDLTVGDYVVH
YDYGIGQYVGLKTMELSSEKRDYLHIVYANEEALYVPMDQIDMVLKYSSYEGHKPKLSKL
GGKTWSKTKASVRMRIKDLSDRLIKLYATRDHAVGHQFSKDNEMMESFERDFKYETTKDQ
HKAIIETKHDMEQPRPMDRLICGDVGFGKTEVALRAAFKAVLNQKQVLYLVPTTVLARQH
YYTFKERFDKYGANVALLSRFVTQKQQSQIIDKLAKGYVDVVIGTHRLLSGDVKYKDLGL
LIIDEEQRFGVEHKEKIREIKNNVDTLTLSATPIPRTLQMSLMGLKDLSMIETPPLNRYP
VQTYVVERQDALIKEAITREIARGGQVFYLFNQVKGIEGMVKRLQKLIPSAKINYAHGKM
SREGLESVISDFIDHQFDILVSTTIIETGVDIPNTNTLIIHDADKLGLSQLYQIRGRVGR
SDRIAYAYLLYEPHKNINDEAQKRLSAIEDFTELGSGYKIALRDLSIRGAGDILGAEQSG
FIDSVGIELYMKLLEEAVTGESLDKPKSTQIDEVYAPRHVDPEYISQDSARIEIHKRISE
LNSIEDVEDLKLELTDRFGDLDADLLLYMYEKLYKKLSSKIGAHKTIVDLYQTTLVLTME
ASQKIDGKKLFEKAENFKQAKVRLSYLKGHVHIQLITKNLKQHWLYVFDQFLESYIYQ
NT seq
3417 nt
NT seq
+upstream
nt +downstream
nt
atgattgatttattaaaacttgatgatgaacttttaaaagaacttaataagaagaataaa
acggtttatttaaaatcttctacagatgtctataattgctatttaatttcaaaaagatat
caggaagaaaaagaaaccatttttgtcgttacagcaaatctttatgaggcacaaaaatat
tatgatactttatcaaatattaatgaccctgatgatgttttattttacccagcagatgaa
acattaacatcaatgatggcattaggatctcctgagtttaagagtgaaagattgtataca
ttaaaacaattgatgacagatgattcttttattgttgtaacaacaatgcaaggtatgagt
caaagacagttaaaacctcaagattatgaaaactcagtaaaacatatctataaagatcat
acatatgatctcaaagatttaacgcagtttttggtttatagcggttatcagcattcattt
accgttgaaaaaccaggtgagttttctttaagggggaatattctagatgtgtttccttta
aatacagaacatccgtatcgactagacttttttgatgatttgttagaacaaattaaaata
tttaaggttgaagatcaaagaagttttgcagaaacaaaacacattgagattgcacctatc
cacgaactattttttacagatcaaatgaaagataatgcaataaaaaaaatcaccaaacat
tttgagaaatttgatctttcagaaagagaacaagaaaaactcaatttagatatcgaacac
atcgatttaagacaaaaacttgatggtttaagtttatatattccgttttttaatgagaca
gaaacaacgatcattgatttttctaaaacacatgaaatctatatgattgatgttcataaa
atggaagtcaatcaagaacacattaaagatgacttagatacatatgcaatcactatgaac
ggaagagcatttttatcaatcaagtatagattagacttaaaagatatactaaaacataga
cacatcgaaattgataattacggatttaataacgataaagggcatgatttaaatgtgtca
gaagtcaataactatcaatcaaatctacaattgttttattcggatatgattgatttagtt
ggcaagtattcaatttacttgtgtgtaaaaacaacacattatcttgaagaattaaaatcg
tttttgattcaaaaaaacataccttttgaaagacaaatcggttctgaaagacttgtatac
gtgattgatgtttcaagtcatggatcattcatatcacacaatgaaaagattatggtaatc
gatgaatcagaactttttaactataaagttagaaaagcaattagatatagaagtgtgctt
acacaatccacaaaaattagacatgtcgatgatcttactgttggtgattatgtagtccat
tacgattacggaatcggacaatatgttggattaaaaaccatggaactgagctcagaaaaa
agagactatctgcatattgtatatgcaaatgaagaagcattatatgtacctatggatcaa
attgatatggtcttaaagtatagtagctatgagggacataaaccgaaattatctaaatta
ggtggaaaaacttggagtaagactaaagcaagtgttagaatgcgtattaaagatttaagt
gatcgtctaattaagttatatgcaacaagagatcatgcagttggacatcagttttcaaaa
gataatgaaatgatggaatcattcgaaagagattttaaatacgaaacaacaaaagaccaa
cataaagccattatcgagacaaagcatgatatggaacaacctcgtccaatggatcgtttg
atctgtggagatgtcggttttggtaagactgaagttgcactacgcgcagcatttaaagca
gtcttaaatcagaagcaagttttatatttagtacctacaactgtattagctagacaacat
tactatacgtttaaagagagatttgataaatatggtgcgaatgtcgcattattaagccgt
tttgtcactcaaaaacaacaatcacaaattattgataaattagcgaagggatatgtcgat
gttgtgataggaacacaccgattattatccggagatgtgaaatataaagatcttggttta
ctgattatagatgaggaacaaagattcggagttgagcataaagaaaagattagagagatc
aaaaacaatgttgatacactaacactttcagcaactccaattcctagaactttacaaatg
tcactcatgggactaaaagatctatccatgatagaaaccccaccattaaaccgttatccg
gttcagacatatgtcgttgaaagacaagatgcgctcatcaaagaagcaatcacaagagag
atcgctagaggtggacaagtcttttatttattcaatcaagtcaaaggaatagagggtatg
gtcaagagattacaaaaactcattcctagtgcgaaaattaattatgctcatggtaaaatg
agtagagaaggattagaaagtgtcatatcggatttcatcgatcaccagtttgatatactc
gtatccactacaattatcgaaacaggtgttgatattcctaatacaaacactttgattatc
catgatgcagataaattagggttgtctcaactttatcaaattagaggaagagtcggtcgt
tctgatagaatcgcttatgcatatctcttatacgaaccacacaaaaatattaacgatgaa
gctcaaaaaagattatctgcaatcgaagactttaccgaacttggaagtggttataaaatt
gcactcagagatttatccattagaggtgctggggatattttaggagcagaacaatctggg
tttattgacagtgttggtattgaactttatatgaagctattggaagaagctgtgacaggt
gaatcattagataaacctaaatctactcaaattgatgaagtttatgcgccgagacatgtt
gatccagaatatatttctcaagatagtgcacgtattgaaattcataagcgtatcagtgaa
cttaattcaattgaggatgttgaagatttgaaacttgaacttacagatcgattcggtgat
ttagacgcagacttacttttatatatgtatgagaaactatataaaaaactatcatcaaaa
attggtgcacataaaacgattgttgatctttatcaaacaacattggtactaacgatggaa
gcttctcaaaagattgatggtaaaaaactcttcgaaaaagcagaaaactttaaacaagct
aaagttagattgagttatttaaaaggacatgttcatatacaacttattacaaaaaatttg
aaacaacattggttatatgtttttgatcaattcttagaatcttacatatatcaataa
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