Tribolium castaneum (red flour beetle): 100142489
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Entry
100142489 CDS
T01046
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
tca
Tribolium castaneum (red flour beetle)
Pathway
tca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100142489
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tca03019
]
100142489
Messenger RNA biogenesis [BR:
tca03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100142489
mRNA degradation factors
5'-3' decay
Decapping complex
100142489
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GSDH
Motif
Other DBs
NCBI-GeneID:
100142489
NCBI-ProteinID:
XP_008190328
UniProt:
D2A5J1
LinkDB
All DBs
Position
LG6:complement(2148921..2153785)
Genome browser
AA seq
683 aa
AA seq
DB search
MADTFFGFDTSINNGDHLLPPDDDDCVENEEEEYDALNDETFGGLEDSSVLDDWEQQHEQ
YAEIAESTKHSEQLENSISRLMLEDNGPLNLSKNSVWAYTPPNKNGDMFNSSILSSLQKA
SKSFIESHSREAPLPSIPLSPIHQVPKQIRTVEELEKNLIKSSKQQPPIKPQVPFPHPLF
RLPPGLPPIGIPPPVRHMLPHHPVPPGLVHMIPPHFMQGGPPRHLIYPQGNAQFPVNHPY
NFPPPPRNVMPPNAAANHVRMQRTRNDSYRSRENNENKDEYAGLMTSREKQWLLNIQMLQ
LNTGTPYFDDYYYTVFKERKAKNNKENFPNRYQNNRQRNNERQDNNNTLTPRVYTPLQFE
NSLGKLQCGSVTAPRKIIDMDIVTPDKDSDSPVVVRDTRKTKQLLLELEALFTLLLKAED
LRNPLAISNMEKLHEIKQKQRLRELDLAPTPEQKQEVLKLLKQDSEPVVENPHDYIVKIV
NGLLQEDKFASFLNIRKGKMLLLRLLPHLTMDGFSAQLLEIWTRILLSIAIVGRRDTAGD
HILPKLHPFFKRYIQTSTMGDILEIVTGLVEVIRQENSRSTPLSHQGKAPLYFVLLNKFG
VSALVTMLIRTEYLISSETASEKQQNDWSNFLVSWADLTGVVSKVATPIEPVPIQIFTKH
CNRFENLTPDKKMQLEKHFVDSN
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggctgatacgttttttggttttgatacgtcgataaataacggagatcatttgttgccg
ccggatgacgacgactgtgtcgagaacgaggaggaggagtatgacgctcttaacgatgag
accttcggggggctcgaagacagctcggtcttggacgactgggagcagcagcacgagcaa
tacgccgaaattgcggagagcacgaagcactccgaacagttggagaactcaatttcacgt
ttgatgctcgaagacaatggcccccttaatttatcgaaaaattcggtctgggcgtacacc
ccccctaacaaaaatggggacatgttcaattcgtcgattctgtcgtccttgcagaaagca
tcgaagtcttttatcgagtctcattcacgtgaggccccccttccctcaatccccctttcg
cccatccaccaagtccccaagcaaatacgtacagttgaagaattagaaaaaaatctaatc
aaaagttcaaaacaacagccccctatcaagccacaagtccctttccctcacccacttttc
cgactaccgccggggctccccccgattggtataccgccccctgtgagacacatgctgccc
caccatcccgtgccccctggcttggttcacatgatcccgccgcattttatgcaaggggga
ccgccaagacacttgatttatccacaaggcaatgcacaatttccggtgaatcacccgtat
aattttccaccgccgcctagaaacgtaatgccgccaaatgcagccgccaatcatgtgcgc
atgcaaaggacgaggaacgatagttatagaagtagggaaaataatgaaaataaggacgag
tatgccggcttgatgacaagtagggaaaaacagtggcttttaaatattcaaatgttgcaa
ttaaacaccggaacgccgtatttcgacgactattattacacggtttttaaagagcggaaa
gcgaagaataataaagagaattttccgaataggtatcagaataataggcagagaaataac
gagagacaggataacaacaataccttgaccccgagggtttatacaccgttgcagtttgaa
aattccttagggaaattacagtgtgggtcggtcactgcccctcgaaaaatcatcgacatg
gacatagtaacccccgacaaggactccgacagccccgtcgtggtccgagacacgcgtaaa
accaagcaactcctccttgaactcgaagctctcttcacgctcctcctcaaagccgaagac
ctacgtaaccctctcgcaatcagcaacatggaaaaactgcacgaaatcaaacaaaaacaa
cgtttacgtgagctagatttagccccaacacccgaacaaaaacaagaagttttgaaactt
ttaaagcaagacagcgaaccagttgtcgaaaatccgcacgattatatcgtgaaaatcgtc
aacggtttgctgcaggaagacaaatttgccagttttttgaacataagaaaagggaaaatg
ttgctgttgaggcttttgccacatttgactatggacggtttttccgcccagttgttggag
atttggacgcggattttgttgagtattgccattgttgggaggagagatacggcaggcgat
cacattttgcccaagttgcatccgtttttcaagaggtacatacagactagtacgatgggt
gatatcttggaaattgtgacgggattggttgaggtcatcaggcaggagaacagcagaagc
acgccgttgagtcaccaaggcaaagcgccgctttatttcgtcctcttgaataaatttggt
gtctctgcactggtgacgatgttgatacgaaccgaatacctgatttcgtccgagacagcg
agcgagaaacaacagaacgactggtccaattttctagtgagctgggccgacctgacagga
gtggtcagtaaagtggcgacacctatcgagcccgttccgattcagattttcaccaagcat
tgcaaccgcttcgagaatctaacacccgataagaaaatgcagttggagaagcactttgtc
gactccaactga
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