Entry |
|
Name |
(RefSeq) histone deacetylase Rpd3
|
KO |
|
Organism |
tca Tribolium castaneum (red flour beetle)
|
Pathway |
tca03082 | ATP-dependent chromatin remodeling |
tca04213 | Longevity regulating pathway - multiple species |
|
Brite |
KEGG Orthology (KO) [BR:tca00001]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
655044
03083 Polycomb repressive complex
655044
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
655044
04350 TGF-beta signaling pathway
655044
09150 Organismal Systems
09149 Aging
04213 Longevity regulating pathway - multiple species
655044
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:tca03036]
655044
Enzymes [BR:tca01000]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
655044
Chromosome and associated proteins [BR:tca03036]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
655044
HDAC complexes
Sin3A-HDAC complex
655044
BRAF-HDAC complex
655044
REST complex
655044
SHIP complex
655044
MiDAC complex
655044
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
655044
Heterochromatin formation proteins
Other heterochromatin formation proteins
655044
Chromatin remodeling factors
NuRD complex
655044
|
SSDB |
|
Motif |
|
Other DBs |
|
LinkDB |
|
Position |
LG3:complement(24021601..24027186)
|
AA seq |
490 aa
MATQPHSRKRVCYYYDSDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAT
AEEMTKFHSDDYIRFLRSIRPDNMSEYNKQMQRFNVGEDCPVFDGLYEFCQLSAGGSVAA
AVKLNKQASEICINWGGGLHHAKKSEASGFCYVNDIVLGILELLKYHQRVLYIDIDVHHG
DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNIPLRDGMDDESYEKI
FVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKKYNLPFMMVGG
GGYTIRNVSRAWTYETSVALGVEIANELPYNDYFEYFGPDFKLHISPSNMANQNTPEYLD
KIKTRLFENLRMLPHAPGVQVQAIPEDAINEESDGEEKVDKDERLPQKDLDKRIVPENEF
SDSEDEGEGGRRDNRTYKGRKRPRLEKGVDGKESTGDEKIKEELKSEKEEKEDSKANTID
DLKKDTGPTP |
NT seq |
1473 nt +upstreamnt +downstreamnt
atggccacacaacctcacagtcggaaacgtgtttgttactattacgacagcgatattggg
aattactattatgggcaaggacaccccatgaagccccaccgcataaggatgacccataat
ttgctgctcaattatggtctgtacagaaaaatggagatttatcgcccccataaagccact
gccgaagaaatgaccaagtttcactcggatgactacattcgatttctcagatccatccga
cctgacaacatgtctgagtacaacaaacaaatgcagaggtttaatgtaggggaggactgt
cctgtctttgacggtttgtacgaattctgccaactctcagctgggggctcagtggcggca
gctgttaaattgaacaagcaagcgtccgaaatttgcatcaattggggcgggggtttgcat
cacgcgaaaaaatccgaagcttcgggcttttgctacgtaaatgatattgttctggggatt
ttggagctgttgaagtaccaccaacgcgtgttgtacatcgatattgacgtgcaccacggt
gacggtgtcgaagaggctttttacaccactgaccgggtgatgacagtctcgttccacaaa
tacggcgagtacttccccggaacgggcgatctcagagacattggcgccggcaaaggcaag
tactacgccgtcaatatcccccttcgtgacggcatggacgacgaatcctacgagaagatt
ttcgttccgataatcagcaaagttatggagacgttccaaccgagcgctgttgttctccaa
tgtggtgcagactccttaactggtgaccgcctggggtgcttcaacctcacggtgcgaggc
cacggcaagtgcgtggagttcgtcaaaaagtacaaccttccattcatgatggtcggaggt
ggtggatacaccattaggaacgtctccagagcatggacgtacgaaacttccgtcgctcta
ggtgtggaaatcgccaacgaactcccttataacgactacttcgagtactttggtcccgat
tttaagctacatatcagtccgagcaatatggccaatcagaacacccccgagtatttggat
aaaatcaagacgcgcttgtttgaaaatttgaggatgttgccgcacgcaccaggtgtgcaa
gttcaggcgattccagaagacgcgatcaatgaagaatcggatggagaggagaaagttgac
aaagacgagagactacctcagaaagatctcgataagaggatcgtgccagaaaatgaattt
tccgatagtgaggacgagggagaaggggggcgaagagacaatcggacgtataagggacga
aagaggccgcggcttgaaaaaggggttgatgggaaagaatcaacaggggatgaaaaaatc
aaagaagaactaaaatctgaaaaagaagagaaagaagatagtaaagcgaacacaattgat
gatttgaagaaagatacgggaccaactccgtga |