KEGG   Tribolium castaneum (red flour beetle): 656322
Entry
656322            CDS       T01046                                 
Name
(RefSeq) ligase III
  KO
K10776  DNA ligase 3 [EC:6.5.1.1]
Organism
tca  Tribolium castaneum (red flour beetle)
Pathway
tca03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:tca00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    656322
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tca03400]
    656322
Enzymes [BR:tca01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     656322
DNA repair and recombination proteins [BR:tca03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     656322
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N zf-PARP LIG3_BRCT DNA_ligase_A_C BRCT_2 RNA_ligase FMP23 TcdB_toxin_midC BRCT_TopB1_SLF1
Other DBs
NCBI-GeneID: 656322
NCBI-ProteinID: XP_967954
LinkDB
Position
LG2:3301228..3303828
AA seq 853 aa
MSDELVEKPFLVEVAKQGRAVCKKCKQKCAQGELRIAKLVANPFGEGKMKNWHHVNCLFE
VFLKQRPTTKRIDDPVEDIDGWVLLDDEQKSDILKRVEECNSFFETKHGVKPSPKKTPQE
AKPSTSSKDSSGPVIQFDPSHKDNQFREFRRVVADISNVSSYLEKTSIVSKMFTKGSDGT
GFKGDIVLWCRLLLPGFVKRIYNLQSKQLVKLFSKIFHCDQDAMLEHLEQGDVSETIQVF
YERSKSFKPVKKSTLTLQQVDEFLQDLTNLTKEEEQTAHLKTFASKCTANDLKIVIRLIK
HDLRMNAGAKHILDGVHPDAYQAFQSSRDIKAVIDRCLKDKGTKARIELMTPVLPMLAEA
CKSVEQAMKKCPNGMYSEIKYDGERVQVHKQGSEFKYFSRSLKPVLPHKVAHFKNYIPQA
FPHGTDLILDSEILMIDTQTGKPLPFGTLGIHKKSEFKDASVCLFVFDCIYYNGDVLTDK
PISFRKKILKENMTEIPNHIVFSEMEEIHDPNDLTQMIAKVLKLGLEGLVLKDITSVYEP
GKRHWLKVKKDYLFGGAMADSADLIVLGAWYGTGKKGGIMSIFLMGCYDEANDRFCTVSK
VSTGHDDKTLEKLQTELDMVKISSDPAKVPDWLHCTKTMVPDFVARDPKKQPVWEITGAE
FTKHEVHTADGISIRFPRVTKIRDDKCWQSATSLKELKVLFAKSKEHTDVSLLLQGTAES
SPKKQKTLESFVKKRGSEDPQSSNSKKVKKEPKTVKIINPLPDYFHNIKVVLEDKVREKQ
WDLIRYFIAYGGQICKHGESENATHMIHLNSMVPEIDQCNPDVKHVTVDWIKNCVVNESV
CDYRPFVVRWKPS
NT seq 2562 nt   +upstreamnt  +downstreamnt
atgtcagatgagcttgttgaaaagccttttctggtggaagtcgcaaagcaggggcgtgct
gtttgtaaaaaatgcaagcagaagtgtgcccagggcgagttgcgcattgccaaattggtt
gccaacccctttggagaaggaaaaatgaaaaactggcatcatgtcaattgccttttcgaa
gttttcttgaagcagagacccacaactaaacgaattgatgaccctgttgaggatatcgac
ggctgggtgttgctagatgacgagcaaaagagcgatattttgaagcgtgtcgaggaatgt
aacagtttttttgaaactaaacatggggttaagcctagtccgaagaaaacgcctcaggag
gcaaaacccagtactagtagtaaagacagttcgggtccagttatccagtttgatccgtca
cacaaggacaatcaatttcgggaattccggagagttgtggccgatattagcaacgtcagt
agttatcttgaaaagacaagtattgtgagtaaaatgttcacaaaagggagcgacgggacg
ggctttaagggcgatatcgtcctttggtgccgcttgctcctccctggtttcgtcaaacgc
atctacaacctccaaagcaaacagttggttaagttatttagcaagattttccattgcgat
caagacgcaatgttggagcatttggaacagggggatgtcagtgagacgattcaggtcttc
tacgagaggagtaaatcgtttaaaccggtcaagaaaagtaccctaaccctccaacaagtg
gatgagttccttcaagacctcactaacttgaccaaagaagaggaacaaacagcacatttg
aaaacttttgcgtccaaatgcaccgcaaatgacctaaaaatcgtcattcgattgatcaaa
cacgatcttcggatgaacgcaggggcgaaacatattctggatggggtacatcctgacgct
tatcaagccttccagtcttcgagggatatcaaggctgttattgatcgttgcttgaaagac
aagggcaccaaagccagaatcgagctaatgaccccggtactacccatgcttgcggaagcc
tgcaaatcggtggagcaagccatgaagaagtgccccaacggaatgtactccgagattaaa
tacgacggtgagagggtacaagtgcacaaacaaggctccgaatttaagtacttttcgagg
agtttaaagccggtattgccacacaaagtcgcacattttaaaaactatatccctcaggcg
tttccgcacggaacggatttgatccttgatagtgaaatcctaatgattgatacacaaact
ggtaagccgctcccgtttggtactttggggatccacaaaaaatccgagtttaaagacgcc
agtgtgtgtctttttgtcttcgattgtatttactacaatggggatgtcctcaccgataaa
cccatctcgttcaggaagaagatcctgaaagagaatatgacggaaatccccaaccatata
gtcttctcagagatggaggaaatccacgatccgaacgatttgactcaaatgatcgccaaa
gtgctcaagctcgggcttgagggcttggtgctcaaagacataacgagtgtttatgagccg
ggcaagcgacattggctcaaagtcaaaaaggattacctttttgggggcgcgatggccgac
agtgccgatttaatagtcctaggtgcgtggtacggtactgggaaaaaagggggcatcatg
tcgattttcctaatgggttgctacgacgaagccaatgatcggttttgcaccgtgtcaaag
gtgtcaaccggacacgatgataaaaccctcgagaagttgcaaacagagcttgatatggtc
aaaatcagctcggatccagccaaggtacccgattggttgcattgtaccaaaacaatggtt
cccgatttcgtggcacgggacccgaaaaaacaacccgtttgggagataaccggagcggaa
ttcaccaaacacgaggtgcatacggctgatggtatctcgataaggttccctcgggttacg
aaaataagggacgataagtgttggcagtcagcaacttcgctcaaagaactcaaagtattg
tttgccaaatcgaaggaacataccgatgttagtttacttctacaagggacggctgaatct
tcgcctaagaaacagaaaactttggaaagctttgtcaaaaaaaggggttcagaggatccg
caatcgtcaaactctaagaaagttaaaaaggaaccgaaaactgtaaaaataataaatcca
ctaccggactattttcacaatattaaggtagtgttggaagacaaagtgagagaaaaacag
tgggatttgattaggtactttattgcgtacggtggccaaatttgtaaacatggagaatcg
gaaaatgccactcatatgatacatttgaacagtatggtacctgaaattgatcagtgtaac
ccggacgttaaacatgttaccgttgattggattaaaaactgtgtggttaatgaaagtgtg
tgtgattatagaccgtttgttgtacgctggaagcccagttaa

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