KEGG   Tribolium castaneum (red flour beetle): 656388
Entry
656388            CDS       T01046                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
tca  Tribolium castaneum (red flour beetle)
Pathway
tca03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tca00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    656388
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tca03041]
    656388
Spliceosome [BR:tca03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    656388
 Complex C
   U5 SnRNP specific factors
    656388
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_TEP1_2nd WDR55 Beta-prop_EML_2 EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_EML Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_EIPR1 Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_IFT122_1st WD40_MABP1-WDR62_1st Beta-prop_SPT8 NBCH_WD40 Beta-prop_DCAF4 Beta-prop_SCAP ANAPC4_WD40 Beta-prop_RIG_2nd WD40_RFWD3 eIF2A Beta-prop_Nup120_160 Beta-prop_IFT140_1st Beta-prop_WDR19_1st WDR90_beta-prop_4th Beta-prop_HPS5 Ge1_WD40 WD_LRWD1 Beta-prop_DCAF12 Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Nbas_N DA_C Cytochrom_D1
Other DBs
NCBI-GeneID: 656388
NCBI-ProteinID: XP_968017
BEETLEBASE: TC015975
UniProt: D6WYC4
LinkDB
Position
LG8:complement(196667..200793)
AA seq 347 aa
MVVEKRRAEDSSSLVPVSKKSKNEVATSNKNKSVLQAAPARTSNLFAPIMLLEGHEGEIF
TVEFHPEGQYVASSGFDRRIFVWSVYGECENLSVMSGHTGAVMELHFTTDGTNIFTASTD
HTLGLWDLPTSQRIKKYKGHTTFVNSVQGARRGPQMLVSGSDDTTIKLWDIRKKQSVTTF
NSNYQVTAVEFNDTAEQIFSGGIDNDIKVWDIRNHEIIYTLKGHTDTVTGLALSPDGSYL
LSNSMDNSLRIWDVRPYAPQERCVKVFTGHQHNFEKNLLRCAWSKDGSKVSSGSADRFLY
IWDTTSRRIIYKLPGHNGSVNDVDFHPNEPIVVSGASDKQIYLGEID
NT seq 1044 nt   +upstreamnt  +downstreamnt
atggttgttgagaaacgtcgagccgaagattcatcatctctagtccccgtaagcaaaaaa
tcgaaaaatgaagtggccacatcgaacaaaaacaaatcggtcttacaagcggcccctgcg
agaacttccaatctatttgcccccattatgttactggagggccacgagggtgagattttc
acagtggaattccaccctgagggtcaatatgtagcttcatcaggtttcgaccgtagaatt
ttcgtttggagcgtttacggtgagtgtgaaaatttatcggtaatgagtggccacacgggt
gctgtcatggagctccacttcacgacagatggcactaacattttcacagccagcactgat
cacacgcttggcctttgggatttaccaacaagtcaaagaattaaaaaatacaaaggtcac
actacttttgttaattcggtccaaggtgcgagacgaggccctcaaatgttggtctcaggc
agcgatgacaccacgattaaattatgggatattcgcaaaaaacaatccgtcacaactttc
aactcaaattatcaagtcactgctgttgaatttaacgacacagctgaacagattttcagc
ggagggattgataatgatataaaagtgtgggatattcgcaaccatgaaattatttataca
cttaaggggcacacggatacggtgacagggttggctttgagcccagacggttcgtattta
ttatcaaattcgatggataatagtctgaggatatgggacgtaaggccatatgcgccccaa
gaaaggtgtgttaaggtttttacgggacatcagcataatttcgagaagaatcttctgcgg
tgtgcttggtccaaagatgggtctaaggttagttcaggatcagctgataggtttctctac
atttgggataccacctctcggaggattatttataagttgcctgggcataacggtagtgtt
aacgatgttgatttccatccaaatgagccaattgtggtctcgggtgcaagtgacaagcag
atttatttaggtgagatagattaa

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