Tribolium castaneum (red flour beetle): 657007
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Entry
657007 CDS
T01046
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
tca
Tribolium castaneum (red flour beetle)
Pathway
tca03018
RNA degradation
tca03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tca00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
657007
09123 Folding, sorting and degradation
03018 RNA degradation
657007
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tca03019
]
657007
03041 Spliceosome [BR:
tca03041
]
657007
Messenger RNA biogenesis [BR:
tca03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
657007
mRNA degradation factors
5'-3' decay
Lsm complex
657007
Spliceosome [BR:
tca03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
657007
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
LSM14
LSM12_LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
657007
NCBI-ProteinID:
XP_968589
UniProt:
D6WFQ0
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All DBs
Position
LG3:2952545..2953168
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AA seq
89 aa
AA seq
DB search
MTSMPVSSSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLLGFDDFVNMLLEDVTEYETTP
EGRRITKLDQILLNGNNITMLVPGGEMPE
NT seq
270 nt
NT seq
+upstream
nt +downstream
nt
atgacttccatgcctgtgtcttcttccaccttgcttccgttagaacttgtggataagtgt
atagggtcaaggatccatattattatgaaaaatgataaggaaatcgtggggacgttatta
ggctttgatgattttgtcaatatgttactggaggatgtaacggaatatgaaacaacgcct
gaaggaaggagaattactaaattggaccaaattctgcttaatgggaacaatataacaatg
cttgttccaggtggagagatgccagagtaa
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