Tribolium castaneum (red flour beetle): 657776
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Entry
657776 CDS
T01046
Name
(RefSeq) polyadenylate-binding protein 1
KO
K13126
polyadenylate-binding protein
Organism
tca
Tribolium castaneum (red flour beetle)
Pathway
tca03015
mRNA surveillance pathway
tca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tca00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
657776
09123 Folding, sorting and degradation
03018 RNA degradation
657776
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tca03019
]
657776
03041 Spliceosome [BR:
tca03041
]
657776
Messenger RNA biogenesis [BR:
tca03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
657776
mRNA cycle factors
Stress granule specific factors
657776
Spliceosome [BR:
tca03041
]
Complex C
Other components
Complex C specific factors
657776
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_7
RRM_10
RRM_5
RRM_occluded
RRM_RdRP1_2
RRM_3
TetR_C_17
Motif
Other DBs
NCBI-GeneID:
657776
NCBI-ProteinID:
XP_008199756
UniProt:
A0A139WP55
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All DBs
Position
LGX:complement(4606267..4608937)
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AA seq
625 aa
AA seq
DB search
MNPGAPNYPMASLYVGDLHTDITEAMLFEKFSTAGPVLSIRVCRDLITRRSLGYAYVNFQ
QPADAERALDTMNFDLIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFS
AFGNILSCKVAQDENGTSKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKER
EKELGEKAKLFTNVYVKNFGEDLTEEQLRTMFEKYGKITSYKIMSKDDGKSKGFGFVAFE
SPEAAETAVEALNGKEIIDGKPLYVGRAQKKAERQQELKRRFEALKMERLNRYQGVNLYV
KNLDDTIDDERLRKEFSPFGTITSAKVMMEDNRSKGFGFVCFSSPEEATKAVTEMNGRIV
GSKPLYVALAQRKEDRKAHLTSQYMQRMANIRMHQMGQFIQPGTSSGYFVPTIPAPQRFY
GAAQMAQIRTNPRWPAQTPVRPGAQGSANPYGTIPTTYRAAPRPPNQSAALRSNINVPRP
ITGQQPPNIQGRPLASQAVVAPAGNRPTTYKYTANMRNPPQGLGISNAAPVQQAVHIQGQ
EPLTATMLAAAPPQEQKQMLGERLFPLIQRMYPDLAGKITGMLLEIDNSELLHMLEHNES
LKAKVEEAVAVLQAHQAKQAAIKKE
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgaatccgggtgctccaaactaccccatggcgtctctgtacgtcggggatctccacacc
gatatcacggaagcaatgctttttgaaaagttttccactgctggaccagtcctttcgatt
cgcgtgtgcagagatttgataacgaggcgttctctcggttacgcttatgtgaatttccag
cagcccgctgatgccgaacgcgctttggacaccatgaattttgatttaatcaagggccgc
ccaattcgcattatgtggtcccaacgcgacccatcccttcgtaagtcgggagtaggaaat
gttttcattaagaatctagatcgttccattgacaacaaggctatgtacgatacgttctca
gcctttggaaacattctcagttgtaaagtagctcaagacgaaaacggcaccagcaaaggc
tacggcttcgtccatttcgaaacagaagaagcggctaacaagtcgatcgaaaaagtaaac
ggcatgttgctcaacggaaagaaagtctacgttggccgtttcattccacgtaaagaacgt
gaaaaggagcttggcgagaaagctaagctcttcaccaacgtttacgtcaagaatttcggc
gaagacttgactgaggagcaactgcgcaccatgtttgagaagtacggcaaaatcaccagt
tacaagatcatgagcaaggacgacggcaagtcgaaaggattcggatttgtcgcctttgaa
agccctgaagccgctgagacagccgttgaagctttgaatggtaaggaaatcatcgatgga
aagcctttgtacgttggacgcgcccagaagaaggccgagcgtcagcaagaattgaaacgt
cgcttcgaagccttgaagatggagcgtttgaaccgctaccaaggcgtgaacctctacgtg
aaaaacctggacgacacaattgacgatgaacgtttacgtaaagaattctctccgtttgga
accataacatcggcgaaagtaatgatggaggacaataggagcaaaggctttggcttcgtt
tgtttctcgtcgccggaagaggccacaaaagccgtgaccgagatgaacggccggatcgta
ggttcaaagcctttatacgtggccttagcgcagcgcaaggaggaccgtaaagcccacttg
acatcacaatacatgcagcgtatggcgaacatacgcatgcaccaaatgggtcagtttatc
cagcctggaacgtcaagtgggtatttcgttccaacgatcccagccccgcagaggttctat
ggggcggcccagatggcccagatccgcacgaacccgcgatggccggctcagacccccgtg
aggcccggagcccagggcagcgctaacccgtacggtaccattccgaccacgtaccgagcc
gcgccaaggcccccgaaccagtccgccgctttgaggagcaatatcaatgtgccaagacca
ataaccggccagcagccaccgaatatacaaggacgaccattagctagccaagccgttgta
gcacctgcaggtaatcgcccaactacttacaagtatacagcaaatatgcgtaatcctcca
caaggtttaggcatcagcaatgctgctccggtccagcaagctgtccacattcaaggccag
gagcctttgacagccaccatgttggcagctgccccgccacaagagcaaaagcaaatgctg
ggtgagaggctcttcccacttattcaacgcatgtatccagatttggccggaaaaatcacc
ggtatgttgctcgaaattgacaattcggaacttttgcatatgttggaacacaatgaatcc
ctcaaagccaaggtggaggaagccgttgctgtcttgcaggcccatcaagccaaacaggct
gctattaaaaaagagtaa
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