Tribolium castaneum (red flour beetle): 658969
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Entry
658969 CDS
T01046
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
tca
Tribolium castaneum (red flour beetle)
Pathway
tca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
658969
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tca03019
]
658969
03041 Spliceosome [BR:
tca03041
]
658969
03009 Ribosome biogenesis [BR:
tca03009
]
658969
03016 Transfer RNA biogenesis [BR:
tca03016
]
658969
Enzymes [BR:
tca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
658969
Messenger RNA biogenesis [BR:
tca03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
658969
Spliceosome [BR:
tca03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
658969
Complex C
U4/U6.U5 tri-SnRNP related factors
658969
Ribosome biogenesis [BR:
tca03009
]
Eukaryotic type
Pre-60S particles
Helicases
658969
Transfer RNA biogenesis [BR:
tca03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
658969
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
MRP-L28
Motif
Other DBs
NCBI-GeneID:
658969
NCBI-ProteinID:
XP_008199267
UniProt:
D6WE72
LinkDB
All DBs
Position
LG3:15661961..15689250
Genome browser
AA seq
1034 aa
AA seq
DB search
MADSIDDLFQCFEEDSDTEKASFKNESTEIQPSSDSKTQASKREHDDDAAVESFSKKAKT
EEEVDLQDINLEELKNRIVVHVIESMESCTHEVACPPGQEYTPLKTCRGEPAKTYPFVLD
SFQKESILCVDNNQSVLVSAHTSAGKTVIAEYAIALSLKNKQRVIYTTPIKALSNQKYRE
FLDEFKDVGLITGDVTINPSASCLIMTTEILRNMLYRGSEVMREVGWVVFDEIHYMRDKE
RGVVWEETLILLPHNVHFVFLSATIPNARQFAEWVAHLHDQPCHVVYTDYRPTPLQHFIY
PAGGSGIHMVVDETGTFKDDSYNAAMAVLQNSGDAAKGDEKGRRGGIKNKDATQTDIFKV
IKMIMERNFAPVIVFSFSKKDCEVFAMQMTKLDFNTTAEKHLVDEVFNNAMDVLSDDDRH
LPQVENLLPLLRRGIGIHHGGLLPILKETIEILFGEGLIKALFATETFAMGLNMPARTVL
FTGMRKFDGHEYRWITSGEYIQMSGRAGRRGLDDKGIVILMVDEKVPPAAGRNIVKGLPD
PINSAFHLTYNMVLNLLRVEEINPEYMLERSFYQFQNQTAIPGLYDKYKEKLEEFNNLQI
ESEPQIASYHTIRQELDKLGLQFRSYLTKPNYLIPFLQPGRLVKIKVGETEYDWGAVVNF
KKVSENIPGRKHGKANPAKTSTKVQVDLLLHVMSSEDGSNNKDVIPKPCLDGQQKGEVEI
VSVESTLITHISTVRLYCPNDLRQKDTRKGVYKSIKEVKKRFPEGPPLLNPIDDMKITES
DFVDIVKKIEQLEKKMYDHPLHKHSLLNTEYEKYEQKVKCKEELAVARQKLLEAKSVLQL
DELKCRKRVLRRLGYCTNTDVIQLKGRVACELSSADELLITEMIFNGVFGNLSPAQACAL
LSTFVCDEKSNEMPKLSEELSGPLRQMQDLARRIAKVSTEARLPLDEDAYVERFKPGLMD
VVFSWCNGSSFSDLCKMTEIFEGSIVRCMRRLEELLRQMIQASKTIGNTDLEDKFNTAIK
VIKRDIIFSSSLYL
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atggcagattccattgatgacctctttcagtgtttcgaggaggattctgacacggaaaaa
gcttcgtttaaaaatgaatcgacagaaatccaaccgtcatccgacagtaaaacacaagcg
tccaaacgcgaacatgacgacgatgctgctgttgagagtttttcgaaaaaagccaaaacg
gaggaagaagtcgatttgcaagacattaacctagaggagttgaaaaatagaattgttgtc
catgttattgagtcgatggagtcgtgcacgcacgaagttgcatgtcctccgggtcaggag
tatacgcccctgaagacatgccgaggggaaccagcaaaaacatatccctttgtgttggac
tcgtttcagaaggaatctattttgtgtgttgacaataatcagtcggttttggtttctgca
cacacgtcggctgggaaaacagtcattgcagaatatgcaatagctctctcgttaaagaac
aagcaacgcgttatatacaccactccaataaaagcactatctaatcaaaagtacagagaa
tttctagacgaatttaaagatgtaggtcttataaccggagatgtaacaataaatccaagt
gcttcttgtcttattatgacaactgaaattttacgaaatatgttatatcggggatcggaa
gtaatgcgcgaagtcggctgggttgttttcgacgagatccattacatgcgtgataaggaa
agaggcgttgtctgggaagaaactctcattttgctaccacataacgtccactttgtgttc
ctttctgccacgataccaaacgctcgacagtttgcagaatgggtggcacatttgcacgac
caaccctgtcatgttgtctatacagattatagaccaacacctttacaacattttatttat
cctgctggtggtagtggcatacacatggttgtggacgaaactgggacttttaaagacgac
agttacaatgctgccatggctgttttacaaaattcaggtgatgctgcaaaaggtgacgaa
aagggcagacgtggaggcataaaaaataaagatgcaactcaaactgacatttttaaagtt
atcaaaatgataatggagcgtaattttgccccagttattgtcttcagttttagtaaaaaa
gattgcgaagtgtttgcaatgcaaatgacgaagcttgattttaatacaactgccgaaaaa
cacttagtggatgaagtttttaataacgcgatggatgttttatcagatgatgaccggcat
ttgccacaagtcgaaaatttgttgcctttgttacgtcgagggattggaatacatcatggt
ggacttcttccgattttgaaggaaacaatcgagattttgtttggtgaagggttaattaag
gctttgtttgcaacggagacgtttgcgatgggtcttaatatgcctgcgaggacggttctt
tttactggaatgaggaaatttgacggacatgaatatcgatggataacttcaggggagtat
attcaaatgtctggacgcgctggccgaagaggtttggacgataaaggtatagttatactg
atggttgatgaaaaggtaccacctgctgctgggcgaaatattgttaagggtttacctgat
ccaatcaattcggcttttcacttgacttacaatatggtcttaaatttgctacgagttgaa
gaaatcaatcctgagtatatgttggaaaggtcattttatcaatttcaaaatcagacggcc
attcctggcttgtacgataaatataaggaaaaattggaggaatttaataatttacaaatt
gaaagtgaaccacagattgcatcgtaccatacaatcaggcaagaattggataaattggga
ttgcagtttcgatcatacttaacaaagccgaattatcttataccctttctacaacctgga
cgtttggtcaagataaaagttggtgaaactgaatatgactggggagctgtggtgaatttc
aagaaagttagcgaaaatatacctggccgcaaacacggcaaagcaaatcccgccaaaact
tccacgaaagttcaggtggatttgttgttgcacgtcatgtcgtctgaggatgggtccaac
aataaagacgtaatccctaaaccttgtctggatggtcagcagaaaggcgaagtcgaaatt
gtaagcgttgagtcaacattgataacacacatatcaaccgttcggttgtattgtcccaac
gatctgaggcagaaagacaccagaaaaggggtttataaatcgataaaggaagtgaaaaaa
cgatttcctgaaggaccgccgcttttaaatccaatagacgatatgaaaatcaccgaatct
gatttcgtagacattgtgaaaaaaatcgaacaactcgagaaaaaaatgtacgatcatcct
ttacataagcattcgctcctaaataccgaatacgaaaaatacgaacaaaaagtcaaatgc
aaggaagaattggcggtggctcgccaaaaattacttgaggccaagtcggttttacagctt
gatgagttgaagtgtcgtaaaagagtactgagaaggctcggttattgcactaatacggat
gtaatacaattgaagggccgggtggcttgtgagttgagcagtgccgacgaattgcttatc
acggaaatgatattcaatggagtgtttgggaatttgtcaccagcacaggcgtgtgcccta
ttgagtacatttgtgtgcgatgaaaaatccaacgaaatgccgaaattgtccgaggaattg
tcggggcccttgcgtcaaatgcaggacctcgcacgaagaatagcaaaagtaagtactgaa
gcaagattgccattagatgaagatgcatacgttgaaagatttaaaccaggcttaatggac
gtggtattttcttggtgcaatggttcttcatttagcgatttgtgtaaaatgacggaaatt
ttcgaaggatcaattgttagatgtatgcgtagattagaggaattgttgcgacaaatgatc
caagcgtcaaaaactattggcaatactgatttggaagataaatttaacactgcgatcaaa
gtcatcaaacgagatataatcttttcgtcgagtctttatttgtaa
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integrated database retrieval system
