Tribolium castaneum (red flour beetle): 659920
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Entry
659920 CDS
T01046
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
tca
Tribolium castaneum (red flour beetle)
Pathway
tca03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tca00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
659920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tca03041
]
659920
Enzymes [BR:
tca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
659920
Spliceosome [BR:
tca03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
659920
Complex C
U4/U6.U5 tri-SnRNP related factors
659920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_19
AAA_22
Flavi_DEAD
AAA_30
SLFN-g3_helicase
nSTAND3
T2SSE
SRP54
Cas3-like_C_2
TsaE
Motif
Other DBs
NCBI-GeneID:
659920
NCBI-ProteinID:
XP_971279
UniProt:
D6WL19
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All DBs
Position
LG5:complement(8402823..8408396)
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AA seq
892 aa
AA seq
DB search
MGKKDKKGRKRYESSSDSESVDSEEEARRKDLKERDEFASRLKKRDEAKVRNIVQASDRR
AYEEAAKRLKLETEDREKMIPALRVQSRRKYLEKRKDDKIAELEEDIADDEYLFEEEILT
EREKKERDRKRELLRLAQEHEKARELERVQRYHMPRDLGKGSTADYVEVDELEKVPQSEQ
KKWEKDQMASAVFKFGAKDSAKKDEYDLLLEDQIDFIQVLQMPGTREKKEPELTEKEKKK
LDIQETKKNLPVYPFRDDLIQAVREHQVLIIEGETGSGKTTQIPQYLHEAGFTNDNKKIG
CTQPRRVAAMSVAARVAQEMEVKLGNEVGYAIRFEDCTSERTIIKYMTDGTLHREFLSEP
DLQSYSVMIIDEAHERTLHTDILFGLVKDIARFRPDLKLLISSATLDAQKFSEFFDDAPI
FRIPGRRFPVDIYYTKAPEADYVDACVVSVLQIHATQPLGDILVFLTGQDEIETCQELLQ
DRVRRLGSKVKELIILPVYANLPSDMQAKIFEPTPPGARKVVLATNIAETSLTIDNIIYV
IDPGFAKQNHFNSRTGMESLIVVPISKASANQRAGRAGRVAAGKCFRLYTAWSYKHELED
NTVPEIQRINLGNAVLMLKALGINDLVHFDFLDPPPHETLVLALEQLYALGALNHHGELT
KLGRRMAEFPVDPMMAKMLLASEKYKCSEEIVTIAAMLSVNGAIFYRPKDKIIHADTARK
NFNHIGGDHLSLLNVYNQWRDSDYSTQWCYENFIQYRSMKRARDVREQLVGLMQRVEIDM
VSNITEAADIKKAITAGYFYHIARLSKGGTYKTVKHNQSVTIHPNSALFEDLPRWVLYHE
LVFTTKEFMRQVIEIESKWLLEVAPHYYKQKELEDSTNKKMPKTVGRSTRTE
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaaaaagacaagaaggggcgtaagcgctacgaatcgagctcggactccgagtcc
gtggacagtgaggaagaagctcgtcgtaaagacctgaaagaacgtgacgagttcgctagt
agactcaaaaaacgcgatgaagccaaagtccgcaacattgtccaggcctcagaccggcgc
gcttacgaggaagccgccaagagactcaaactggaaactgaagaccgcgaaaaaatgatc
cccgccttgagggtgcagtcaagacgtaaatatttagagaaacgtaaagatgataaaatc
gcggaattggaggaggatatcgctgacgatgagtatttgttcgaggaggagatattaaca
gaacgtgagaaaaaggagcgcgaccgtaagcgggaattgctgcggttggcacaggaacat
gaaaaagcgcgtgaattggaaagggtgcagcggtaccacatgcccagggatttgggcaag
gggtcaacagcggactatgtggaagttgatgagctggaaaaggtgccccagtcggagcag
aagaaatgggagaaggaccaaatggcgtcggcggtcttcaagttcggggccaaggattca
gccaagaaggacgagtacgatttgttgctggaggaccagattgacttcatccaagtcttg
caaatgccaggcacacgagagaagaaagagcccgaactaaccgaaaaggaaaaaaagaag
ctcgacatccaagaaacgaagaaaaacctcccagtctacccgtttcgcgacgacttgatc
caggccgtccgcgagcaccaggtcctaataatcgagggtgaaaccggctctggaaaaaca
acccaaatcccgcagtacttgcacgaagccggcttcaccaacgacaataaaaaaatcggc
tgtacgcagccacgccgtgtcgccgccatgtcggtagcggcccgcgtagcccaagaaatg
gaagtcaaactcggcaacgaagtcggttatgcgatcagattcgaagattgcacatccgaa
cgtacaatcatcaaatacatgaccgacggcacgctccaccgcgaatttttatccgagccc
gacctgcagtcctacagcgtcatgatcatcgacgaggcccacgagcggacgctacacacg
gacattttgttcggtctggtcaaagacatcgcccggtttcgccccgacttgaaactgctg
atttcgagcgcaacgctcgacgcgcaaaaattctccgagtttttcgacgatgcgcccatt
ttccgcattccaggccggaggtttccggtggatatttactacactaaggcgccagaggcc
gattatgtggacgcgtgcgttgtttccgttctacaaattcacgcgactcaaccgttaggg
gatattcttgtttttttgaccggtcaggatgagattgagacgtgtcaggagttgttgcag
gatcgggttcgccggttgggctccaaagtcaaggaactgattattctgcccgtttatgcg
aacctgccaagcgacatgcaagcgaaaatttttgaaccgacgcctccaggggcccggaaa
gttgtgcttgcgacaaatatagcggagacttctttaacgatagacaatataatctatgtt
attgatcccggttttgccaaacaaaaccacttcaattcgcggactgggatggagagcctg
attgtggtgccaatttcgaaagcctcggctaatcagagggctgggagggctggcagagtg
gcggccgggaagtgttttcgtttgtacaccgcctggtcctacaagcatgaactggaggac
aataccgtgccggaaatacaaaggattaatttaggcaacgctgtactgatgctgaaagcg
ttggggattaacgatttggtgcatttcgattttcttgatccgccaccacatgagacactt
gttctggcactggaacagttgtatgctttaggggcgttgaaccatcacggggagttgacg
aagttggggcgcaggatggcggagtttccggttgatccgatgatggccaaaatgttgtta
gcttcggaaaaatacaaatgttcagaggagattgtgactattgcggccatgctttcggtc
aatggggcgattttttacaggcccaaggataaaattattcatgctgacacggcacgcaaa
aattttaatcacatagggggtgaccatctgagcttgttaaatgtgtacaaccagtggagg
gattccgattattccacccaatggtgctacgagaattttatacaatacagatctatgaaa
agggctcgcgatgtgagggaacagttggtcggtttaatgcaaagggttgaaatcgacatg
gtgtcaaatataaccgaggctgcagacattaaaaaggctataaccgccggttatttctac
cacattgctcggttatccaaaggagggacttacaaaaccgttaaacataatcagagtgtc
acaatacatcccaatagtgccctttttgaggacttgccaagatgggttctttatcacgag
ctggtttttaccaccaaagagtttatgagacaagttatagaaatcgagagtaagtggctt
ttggaggttgcacctcattattacaagcagaaggaactggaggattctaccaacaaaaaa
atgccaaagactgtcgggcgtagcaccagaactgaataa
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