Tribolium castaneum (red flour beetle): 660112
Help
Entry
660112 CDS
T01046
Name
(RefSeq) fibril-forming collagen alpha chain
KO
K19719
collagen type II alpha
Organism
tca
Tribolium castaneum (red flour beetle)
Pathway
tca04512
ECM-receptor interaction
tca04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
tca00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
660112
04518 Integrin signaling
660112
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tca00536
]
660112
Glycosaminoglycan binding proteins [BR:
tca00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
660112
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
DUF3823_C
TILa
Motif
Other DBs
NCBI-GeneID:
660112
NCBI-ProteinID:
XP_008194279
UniProt:
D6WN28
LinkDB
All DBs
Position
LG5:12684890..12690487
Genome browser
AA seq
1545 aa
AA seq
DB search
MDLLIYLRIALLMHVISISESRIRRKAKSVESQNVEASGKISQIQNQQPVANYDDYSSEY
DYVDEYDEHATSTESRARITTPQPPDERPINEFTTERFSQPNNERPTPSLLIPTGTVDIH
ILHPTKPPTDSHVGAYSCRHNGKLYRDEEKWSVNFCTNCTCVRGTVECKTDEDCNKGIRP
TREPQGFDIPGPRGEAGYPGEPGRPGESGAPGSPGTPGIPGLPGPPGPPPDLSAYYQQLA
LSQGSQDKGPSFPVEPFQYLQAQVGPVGPRGPPGPSGLAGPQGFQGTRGEPGEAGPQGPP
GPPGPRGLPGPPGKDGVPGEDGEAGQPGASGPPGPRGLPGMPGLPGVKGHRGFPGLDGIK
GEQGPPGEKGIPGNPGPVGPSGPVGPSGPRGERGREGPQGSPGLRGMDGIAGPPGLPGEM
GKPGPPGFPGIPGAKGDHGSPGPKGSQGLQGPRGESGRPGQPGETGLPGIPGKDGSPGEK
GNPGAPGISGPPGFPGVRGLPGVNGSPGQPGAKGNTGSPGVPGYKGESGAKGETGAPGPR
GLPGVPGSEGKRGKRGMRGPPGPGGPPGERGMPGARGLPGPDGAVGPKGQTGDRGSAGPP
GPKGSLGEPGRPGAVGPQGLRGLTGRPGPQGRSGPPGERGMPGADGKPGETGPQGLQGLP
GPLGPPGDKGLQGEAGKDGEPGLPGPPGPRGDNGKDGAMGPQGAPGPPGVDGERGPPGVT
GPRGFQGLPGTPGNQGMPGKDGEPGLQGPPGVPGNIGPRGERGFPGERGPVGQPGIPGLK
GNVGSPGPDGVQGPPGLPGAKGHSGAPGLVGLPGLRGQPGPQGEKGERGSIGPVGPEGPP
GRQGERGQQGLMGPPGPPGEPAERGEPGPPGLPGESGAPGAPGERGPVGSPGLQGFPGPQ
GLVGLPGLKGDRGIPGLKGMQGNPGHVGKPGEQGPPGPIGLTGAKGARGEAGTRGDAGLM
GPPGRPGDSGPPGHPGNAGPPGPAGLPGIKGATGDSGKMGLPGPQGLPGPPGLEGMKGET
GAEGPVGPSGPPGPAGLAGDRGLPGLPGPPGPPGMRGMRGAPGEVGTPGKPGSEGAQGPP
GLTGPPGPPGPTGEQGPEGPSGKPGMPGVAGRTGDKGPVGPVGPPGPSGPPGLPGPPGPL
GPIGLTGERGPRGETGPQGAEGPPGERGKPGVPGLEGKKGDRGEPGPAGSKGHRGLIGLQ
GLPGSPGFPGEKGSPGNPGPPGKDGEAGSRGPPGRDGSPGPQGVPGLVGPRGGNGNDGKA
GPPGPPGPPGPPGPPGDGLGYDAASLAALLAQGQVNNQKGPDPLGDEPARISGKSMSEQQ
RREFVIKAYEQLKTSFEKFKKPNGEKNNPGKTCKDISNAYPELKSGQYWVDPNEGDPKDA
ILVYCDMEQKSTCIVPKPEKSPEIYHQGKESEIWLGEIKGGLKISYKAHSNQIGFLQLLS
SHAQQNITFNCKNTAAYYDVARHTYKKGIKLMAWNDVELTPRGNARLRYEALVDECRLHT
DTWARSVLSYQTDKTTRLPIIDVAIRDTGRSNQGFSVEVGHVCFS
NT seq
4638 nt
NT seq
+upstream
nt +downstream
nt
atggatttgttaatttatctaaggattgcgcttttaatgcacgtgatttcaatttctgag
agtcggattagaagaaaagcgaagtctgtggaatcccaaaatgtggaagcgagcggaaaa
atatcgcaaatacagaatcaacagccggttgcgaattacgacgattattcgtcggaatac
gattatgtggatgagtacgacgaacacgctacatctacggaatccagagcccgtatcacg
accccccagcctccagacgagcgtccaataaacgaattcacaaccgaaagattctcccaa
cctaacaacgagcgtcccaccccatctctactaattcccactggaacagtcgacatccac
attctgcaccccaccaaacccccaactgacagtcacgtgggggcgtacagttgtcgccac
aatggaaaattataccgtgatgaggaaaaatggagcgtcaatttttgcacaaactgtaca
tgtgtacgaggaaccgtcgaatgtaaaaccgacgaagattgcaataagggcattagacca
acgcgcgagcctcaaggcttcgatattccgggacctcgtggcgaggcaggatatccggga
gaacctggacggccgggagagtcaggagcgcctggatctcctggtactcccggaattcca
ggactgcctggtcccccaggcccccctccggacctctcagcctattaccaacaactggcc
ctttcgcaagggagtcaagacaaagggccgagtttcccggttgagccgtttcagtacttg
caagcgcaggttggacctgtgggtcctaggggacctccgggaccgtctggattggcggga
ccgcaaggttttcaagggacgaggggagagccgggcgaggcgggccctcaaggaccgccg
gggcctccaggacctagaggattacccggtcctccgggaaaagatggagttcctggagaa
gatggtgaagctggacaaccgggtgctagtggtcctccgggaccaagaggattacctgga
atgccaggcttaccgggggttaagggtcatcggggttttcccggtcttgatgggattaaa
ggggagcaaggaccaccgggtgaaaaagggattcctggaaatccgggaccagttgggcct
tcgggtccggtggggccgtcaggacctagaggagaaagggggagggaagggcctcaagga
tcaccggggctaagaggaatggatggcattgctggaccacctggactacctggtgaaatg
ggcaagcctggtcctccgggatttccgggaataccaggtgcgaaaggcgaccacggaagc
ccaggtcccaagggaagtcaaggattgcaaggaccgcggggagaatcgggccgtccaggc
caacctggtgaaaccggacttccaggaattcctggaaaggatggttctcctggagagaag
ggcaatcctggggcgcctggtatctcaggtcccccaggattcccaggagttcgcggactt
ccgggtgtaaatggtagtccggggcaacctggagcgaaaggcaatacgggtagtccgggt
gttccgggatacaagggagaaagtggcgctaaaggagaaaccggcgctcctggtcctagg
ggattacctggagtgccaggttcggaaggaaaacgcggaaaaaggggaatgaggggtcca
cccggtcctggaggcccacctggtgagagagggatgccgggagccaggggacttcctggt
cccgatggagccgtcggtcctaaaggccaaacaggcgatagaggttctgctgggcctcct
gggcccaaaggatcgcttggtgaacctggacgacctggagctgtgggacctcaagggttg
cgtgggctaacgggcaggcctggtcctcagggaagatcgggaccgccgggtgaaagggga
atgccaggagcggacggaaaaccgggagagactggacctcaaggtctccaaggattgcca
ggacctttgggaccgccgggtgataagggtttgcaaggcgaagcaggaaaagacggcgaa
ccgggactaccagggccaccaggaccacgtggtgataatgggaaagatggggcaatggga
ccacaaggagccccaggtcctccgggagttgacggggagaggggaccacctggagttaca
ggtcctagaggttttcaaggtttaccgggaacaccgggaaatcaaggaatgcccggaaaa
gatggcgaaccaggattgcaaggcccaccgggagttcccggaaatattgggccacgaggc
gaaagaggatttcccggtgaaaggggaccggttggacaaccgggaataccgggtctaaaa
ggaaatgtgggatcaccaggtccagatggtgttcaaggtccaccaggacttccgggagca
aaaggacattcaggggcgccaggtctagtcggtctgcctggattgcgcggacaaccgggc
cctcaaggagaaaaaggcgaacgaggatcgattggtcctgtaggccctgagggaccacca
ggccgtcaaggtgaaagaggccaacaagggctaatgggtccgcctggaccccctggtgaa
cctgcagaaaggggcgaacctggtccgcctggcttacctggagaatcgggagctccaggc
gctcctggcgagaggggccctgttggctctccaggtctacagggtttccccggtccccaa
ggattagttggtttgcctggattaaaaggcgataggggaatacccggtttaaaaggaatg
caaggaaatccaggtcatgtcggcaaacctggagaacaaggtccacccggcccaatcggt
ttaacgggtgcaaaaggtgcacgaggagaagcaggaacacgtggagacgctggtctaatg
ggacctcctggacgtccgggagattcaggtccacccggccatcctggaaatgctggtcct
ccaggtccggcaggactacccggaattaaaggagccacaggcgattctggaaagatggga
cttccgggaccacaaggcttacccggaccacctggactagaaggaatgaaaggtgaaact
ggggctgaaggacctgtaggaccatctggacctccaggccccgctggcttggcaggtgac
cgaggtttaccgggactccccggtcctccaggaccacccggtatgagaggaatgagagga
gcacccggtgaagtaggtactcccggaaaacccggaagcgagggcgcccaaggtcctcca
ggattaaccggaccaccaggcccacctggacccactggagaacaagggccagagggacct
tcgggaaaaccgggaatgccaggtgtggcaggaagaacaggagataaaggccccgtggga
ccggtaggaccccctggtccatccggccctcctggtttgccgggcccccccgggccactt
ggccccatcggcctaaccggcgagagaggccctcggggcgaaaccggccctcaaggcgcc
gaaggtcccccaggagagcggggaaaaccaggagtccctggcctagaaggcaagaaagga
gaccgtggcgaaccaggacctgcaggctccaaaggccatcgcggtttaatcggccttcaa
ggtctccccggctctccaggtttccctggcgaaaagggctcaccagggaaccctgggccc
cctggcaaagacggtgaagccggttctagaggtccgccagggagagatggaagtccagga
ccacagggagttcctggtcttgtcgggcctcgtggcggtaacggtaacgacggtaaagct
ggccctccaggtcctccgggtcccccaggaccaccggggcctccaggagacggtctaggt
tacgatgcggctagtttagcagcattgcttgcccaaggacaggtgaataatcaaaaagga
ccggatccactcggggacgagccagcaaggatttccggaaaatcgatgtctgaacaacaa
cgaagagaattcgtaattaaggcctacgagcagttgaagacctctttcgagaagtttaaa
aaaccaaacggggagaagaataatccagggaagacttgtaaagacatttccaatgcttat
ccggaattaaaaagcggacaatattgggtcgacccgaatgaaggtgaccccaaagatgcg
attctagtttactgtgatatggaacaaaaaagtacttgtattgtcccaaaaccggaaaag
tcgcccgaaatttatcaccaaggaaaagaatcggaaatatggttgggagagattaaaggc
ggtttaaagatttcctacaaagcgcacagtaaccagattggatttctgcagctcctgtcc
tcacacgcccaacaaaacattacatttaactgcaaaaacacagcagcgtactatgacgtt
gctagacatacgtacaaaaaagggataaaattaatggcttggaacgacgtggagttaact
cccagaggtaacgctcgtttgagatatgaagcactggtcgatgaatgtagacttcataca
gacacatgggcaagatcagtcctctcttaccaaacagataaaacaacgagactaccaatt
atagatgttgcaatcagagataccggaagatcgaaccaagggttttcagtggaagttggc
cacgtttgcttttcttaa
DBGET
integrated database retrieval system
