Tribolium castaneum (red flour beetle): 663107
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Entry
663107 CDS
T01046
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
tca
Tribolium castaneum (red flour beetle)
Pathway
tca03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tca00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
663107
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tca03041
]
663107
Enzymes [BR:
tca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
663107
Spliceosome [BR:
tca03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
663107
Complex B
663107
Complex C
U2 SnRNP specific factors
663107
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
TAF1D
Motif
Other DBs
NCBI-GeneID:
663107
NCBI-ProteinID:
XP_008196207
UniProt:
D6WV09
LinkDB
All DBs
Position
LG8:4265141..4274255
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AA seq
702 aa
AA seq
DB search
MSGFNYSGFQMNQKRHNAVPPPPMSGVSKQGYSTMNAISQNALSAAWGGSRKRAATEDEY
FEDDEEETVPDLAYIPAPGSPTRVETKKQEVPNDDDDPLDAYMAGIEKQMKSEKPGSSSQ
PTGVRNDLEEEDVEESYYRYMEENPNAGLAPVEEELDLEYDEDGNPIPPDKKKIIDPLPP
IDHSTIEYKPFEKNFYNEHPEIASLSNKQVAELRKTFDITVSGTHPPKPVSSFAHFNFDD
KLLKAIIKAEYTSPTPIQAQAVPCALQGRDVLGIAQTGSGKTAAFLWPLLKHVSTQPPVT
AGEGPAALILAPTRELAIQIYNEAKKFARVYDLTVVCAYGGGSKWEQSLALKEGADIVVA
TPGRIIDHVKGGATNLQRVTFLVLDEADRMFELGFEPQVRSVCNHVRPDRQTLLFSATFR
KRIEKLAKDALNDPVRISQGITGQANEDVTQRVLLMENQQLKRDWLVNNLVELLSAGSVL
VFVTKKVDAEQLANDLKVKEFECLLLHGDIEQAERNKVITAFKKKECSLLVATDVAARGL
DIPHIRTVVNYDIARDIDTHTHRIGRTGRAGNQGTAYTLITPKDKEFVGHIVKNLEAAHQ
DVPQEVLDLALQSSWYRKQRYKSKGGNPNVGGVGLGFKEKVGGASKTFVGESHSQSRGPA
TDRLSAMKAAFKAQYMNQFTASSDPVPQAPPPASTRKKSRWQ
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgagtggcttcaactactctggtttccaaatgaaccaaaagcggcataatgccgtgccg
ccgccccccatgagtggcgtaagcaagcagggctattccactatgaatgcgataagtcag
aatgccttatctgctgcttggggcggtagccgcaaacgggctgccaccgaggatgagtat
tttgaggacgatgaggaagaaactgtgccagatctcgcgtacatacctgcccccggcagc
cccacgcgtgtcgaaaccaagaaacaagaggtgccaaacgatgatgatgatcctttagat
gcctacatggcagggattgaaaaacagatgaagtcggagaaaccgggcagttcgtcgcaa
ccgactggggttaggaacgatttggaggaggaagacgttgaagaatcgtattataggtat
atggaagagaatccgaacgcggggttagccccagttgaggaagaattagacctagaatat
gacgaagacggtaaccctatccccccagataagaaaaaaataatcgaccctttgcccccc
atcgaccactcaacaatcgaatacaaacccttcgagaaaaacttctacaacgaacaccca
gaaatcgcgagtttatcaaacaaacaagtggccgaattgcgcaaaactttcgacatcacc
gtttcaggcacacacccacctaaacccgtctcgtcctttgcccatttcaactttgacgat
aaactcctcaaagccataattaaagctgagtacacctcgcccactccaattcaagcacaa
gctgttccttgtgcccttcaagggcgcgatgttttgggcatcgcccagactggaagcggt
aaaaccgctgcttttttatggccactgcttaaacacgtgtcgacgcagcccccagtcacg
gcaggcgaaggcccagcggctttaatactcgcccccacacgagaattggccattcagata
tacaacgaggcgaaaaaatttgcccgtgtttacgatttgacggtggtttgtgcgtatgga
ggcgggtcgaagtgggagcaaagtctggcgttgaaagagggggctgatattgttgttgcc
actcctgggaggattatagatcatgtgaaagggggcgctacgaacttgcaaagggtgacg
tttttggtgctggatgaagccgatcggatgtttgaactggggtttgagccacaggttagg
tcggtttgtaaccatgtgagacctgatcggcaaacgttgctgtttagtgcgacgtttcgg
aaaaggattgagaagttggcgaaggatgcgctgaatgatcctgtgaggatttcacaaggg
attacagggcaggctaacgaggatgtgactcagagggttcttttgatggaaaaccaacag
ttgaagagggattggttggtgaataatttggtcgagttgttatccgctggttcggtgttg
gtgtttgtcacgaagaaagttgatgccgaacaattggccaacgatttaaaagtcaaagaa
ttcgaatgtttgttactccacggtgatatagagcaggccgagcgtaacaaggttataacc
gcattcaagaaaaaagaatgtagcttattggtggccacggacgttgcggcccgcggtcta
gacatcccccacatccgtacggtggttaattacgacatagcacgtgatattgacacgcac
acgcaccggattggtcgaacggggcgtgccggcaatcaaggcaccgcctacacgttaatc
acgcccaaagataaggaatttgtgggccatattgttaaaaacttggaagcggcgcatcaa
gacgtacctcaggaagtgctagacttggcattgcaaagttcatggtacaggaaacagcga
tataagagtaaaggtggtaacccgaacgtgggcggggttgggctgggcttcaaggagaaa
gtgggaggggcttcgaagactttcgtgggggaatcacacagccagtctcgagggccggcc
actgatcgcttatcggcgatgaaagcggctttcaaagcccaatacatgaatcagtttaca
gcaagttctgacccggttccacaagctccgccccccgcctccacacgaaagaagagtaga
tggcagtga
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