Tribolium castaneum (red flour beetle): 664220
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Entry
664220 CDS
T01046
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
tca
Tribolium castaneum (red flour beetle)
Pathway
tca03018
RNA degradation
tca03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tca00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
664220
09123 Folding, sorting and degradation
03018 RNA degradation
664220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tca03019
]
664220
03041 Spliceosome [BR:
tca03041
]
664220
Messenger RNA biogenesis [BR:
tca03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
664220
mRNA degradation factors
5'-3' decay
Lsm complex
664220
Spliceosome [BR:
tca03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
664220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Scm3
Motif
Other DBs
NCBI-GeneID:
664220
NCBI-ProteinID:
XP_008194436
UniProt:
D6WJA0
LinkDB
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Position
LG5:14491211..14491984
Genome browser
AA seq
133 aa
AA seq
DB search
MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEVIDMVKEEAVVKNRGRDMKGGRGGQNQRNRPAARGNFGGRTGKPGQ
GGRNPPFQKQKPK
NT seq
402 nt
NT seq
+upstream
nt +downstream
nt
atgctgcctttatcgttgcttcgaactgcccaaaaccaccccatgcttgtagaattaaaa
aatggggagacgtacaacggccatttggtcagttgcgacaactggatgaatattaattta
cgcgaagtcatttgtacttctagagatggcgacaagttttggcgaatgcctgaatgctac
ataagaggtagcacaataaaatatttgcgtatcccggatgaggtgatagatatggttaag
gaggaagctgtggtgaagaacagaggcagggacatgaaaggaggccgtgggggccaaaac
cagagaaacagaccggctgcgagagggaactttggaggccgtactggcaagcctggacaa
ggcggacggaaccccccatttcagaagcaaaaaccaaaataa
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