Trinickia caryophylli: U0034_01155
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Entry
U0034_01155 CDS
T09722
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
tcar
Trinickia caryophylli
Pathway
tcar02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tcar00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
U0034_01155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tcar03021
]
U0034_01155
Transcription machinery [BR:
tcar03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
U0034_01155
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r1_1
Sigma70_r1_2
DUF2090
DUF7161
Motif
Other DBs
NCBI-ProteinID:
WQE12067
LinkDB
All DBs
Position
1:264124..265344
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AA seq
406 aa
AA seq
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MNSTERASRANLDTQAIGPLLALAGRQGYLLRDDIVDALPPDVCSPETLDAMLATLTQAG
IEVLDERPDREASAHTSQSLVEREALEEAGVALAEIAGSGGASLDTLAVFTRRMQAVPLL
THQEEIALAQEIEAGRAALNRLAAPPQGTEAALASDARHAERRIERATSKMVEANLRLVL
SIAKRYQNRGLDLADLVQEGTIGLMRAVEKFEYRRGFKFSTYATWWIRQAVARAVADRGR
TIRIPVHVNDELARVRRTRERMRRAAGHRPALDELAAECGLSQQRVRALLDLPSEPASLN
APLPDGEAEFGDLIEDPAGPSPLDTVVERRMRECMAALLANAAPADADVLRRRFGLSDQA
PRTYEQISHDTGFSREHVRRIERRALKALRESADALAAHSFLDVDA
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgaattcgaccgagcgcgcatcgcgcgcgaaccttgacacgcaagccatcggcccgttg
ctcgcgctcgccggccggcaaggctacctcttgcgcgacgacatcgtcgacgcgctgccg
cccgacgtctgctcgccggaaacactggacgcgatgctggcgacgctcacacaagccggt
atcgaggtgctcgacgagcggccggacagagaagcgtcggcacacacgtcgcagtccctc
gtcgagcgcgaggcgctagaggaagcgggcgtggcgctcgcggaaattgccggcagcggc
ggcgcctcgctcgatacgctcgcagtcttcacgcgccgcatgcaagcggtgccgctgctc
acgcatcaggaggagatcgcgctcgcgcaggaaatcgaggcgggacgtgctgccttgaac
cgtcttgccgcccccccgcaagggacggaagcagccttggcgtccgatgcgcggcatgcc
gagcggcgtatcgagcgggcaacatcgaagatggtggaggcgaacctgcggctcgtgcta
tcgatcgccaagcggtatcaaaaccgcgggctcgatctggcggacctcgtgcaggaagga
acgatcgggctcatgcgcgccgtagagaaattcgagtaccggcgaggcttcaagttctcg
acctacgccacctggtggattcgtcaagccgtggcgcgcgccgtggcggaccgcggccga
accatccgcattccggttcacgtgaacgacgaactggcacgcgtgcggcgtacgcgcgag
cggatgcggcgggcggcggggcaccggcccgcgctcgacgaactcgccgccgaatgcggc
ttgtcgcagcagcgggtccgcgcgttgctggatttgccgagcgagcccgcgtcgctcaat
gcaccgttgcccgacggcgaagccgagttcggcgatctcatcgaggatccggccggcccc
tcgccgctcgacacggtcgtcgagcgacgcatgcgcgagtgcatggcggcgcttttggcg
aacgccgccccggcggatgccgatgtgctgcggcggcgtttcggccttagtgatcaggcg
ccgcgcacgtacgagcagatctcgcacgacacgggattttcacgcgagcatgtccgccgc
atcgaacggcgcgcactgaaagcgctgcgcgaatcggccgacgcactcgccgcgcacagc
tttctcgacgtggacgcctga
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