Trinickia caryophylli: U0034_02140
Help
Entry
U0034_02140 CDS
T09722
Name
(GenBank) ABC transporter ATP-binding protein
KO
K02052
putative spermidine/putrescine transport system ATP-binding protein
Organism
tcar
Trinickia caryophylli
Pathway
tcar02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
tcar00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
U0034_02140
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
tcar02000
]
U0034_02140
Transporters [BR:
tcar02000
]
ABC transporters, prokaryotic type
Mineral and organic ion transporters
Putative spermidine/putrescine transporter
U0034_02140
BRITE hierarchy
Motif
Pfam:
ABC_tran
TOBE_2
AAA_21
AAA_25
TniB
SMC_N
Rad17
AAA
AAA_22
AAA_30
Mg_chelatase
AAA_16
AAA_19
AAA_28
nSTAND3
Zeta_toxin
ABC_ATPase
CysA_C_terminal
NACHT
AAA_29
NB-ARC
Motif
Other DBs
NCBI-ProteinID:
WQE12244
LinkDB
All DBs
Position
1:485364..486431
Genome browser
AA seq
355 aa
AA seq
DB search
MTFLHLENVSKRYGEFHAVQGLSLDVERGEFVSLLGPSGCGKTTTLQMIAGFAAPSEGRI
LLDGHDITSLAPEKRGMGVVFQSYALFPHMTVAENVGFGLEMRKMPRPRRAERIRTALAM
VHLNGLEARYPRELSGGQRQRVAIARALVIEPRVLLLDEPMSNLDAKLREEMHIELRAIQ
RQLGITTILVTHDQVEAMTMSDRIAVMHGGRIVQIAAPFDAYERPVSTFASTFLGRTNAL
EGKVVERHGRCCVVRLGAQLARIAHGERAFGENVHVYVRPEKLRFASNGEAALDGHVRTR
LFLGNHWMLEIDSALGVFRMSQPNIGLPPPIEGEAVRIAWSDEDLHMLDTEVSHG
NT seq
1068 nt
NT seq
+upstream
nt +downstream
nt
atgacatttctgcatctcgagaacgtttcgaagcgctacggcgagtttcacgccgtccaa
ggcctgtcgctcgacgtcgagcgcggcgaattcgtctcgctgctcggaccgtccggctgc
ggcaagaccacgacgctgcagatgattgccggcttcgccgctccgagcgaagggcgcatc
ctgctcgatgggcacgacatcacttcgctcgcacccgaaaagcgcggcatgggggtcgtc
ttccagagctacgcgctttttccccacatgaccgtggccgagaacgtcggtttcgggctc
gagatgcgcaagatgccgcggccgcgacgcgccgagcgcattcgcacggcgctcgccatg
gtgcacctgaacggcctcgaggcccgctacccgcgcgagctgtcgggcggccagcggcaa
cgcgtcgcgatcgcgcgggcgctcgtgatcgagccgcgcgtgctgctgctcgacgagccc
atgtcgaatctcgatgcgaagctgcgcgaagaaatgcatatcgagctgcgtgccatacag
cgtcaactcggcattacgacgattctcgtcacgcacgatcaagtcgaagcaatgacgatg
agcgatcgcatcgccgtcatgcacggcgggcgaatcgtacagatcgccgcaccattcgat
gcctacgagcgtccggtctcgaccttcgcctcgacgtttctcggccgcaccaacgcgctc
gaggggaaggtcgtcgagcggcacggccgttgctgcgtcgtgcggctcggcgcccagcta
gcgcgcatcgcacacggcgagcgcgcattcggcgagaacgttcacgtctatgtgcgcccc
gagaaactgcggttcgcatcgaacggcgaagcggcgctcgacggacacgttcgcacacgc
ctcttcctcggaaaccattggatgctcgaaatcgacagcgcgctgggcgtgttccgcatg
agccagcccaacatcggtctgccgccgccgatcgaaggcgaagccgttcgcatcgcctgg
tccgacgaagatctacacatgctcgacacggaggtctcccatggctga
DBGET
integrated database retrieval system
