Trinickia caryophylli: U0034_03055
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Entry
U0034_03055 CDS
T09722
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
tcar
Trinickia caryophylli
Brite
KEGG Orthology (KO) [BR:
tcar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcar03019
]
U0034_03055 (hrpA)
Enzymes [BR:
tcar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
U0034_03055 (hrpA)
Messenger RNA biogenesis [BR:
tcar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
U0034_03055 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
NACHT
AAA_19
nSTAND3
T2SSE
AAA_30
PhoH
TsaE
AAA_23
Motif
Other DBs
NCBI-ProteinID:
WQE12418
LinkDB
All DBs
Position
1:complement(682826..686914)
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AA seq
1362 aa
AA seq
DB search
MSNVPNSPAADEGGRGKPSRPRRDGPRASPIPPNPIPPIEFPPALPVTGRREEIARAIRD
HQVVIVSGETGSGKTTQLPKICLTLGRGRGAGGSGLIGHTQPRRIAASATGRRIAEELGT
PFGEVVGYKVRFNDNLAPGASVKLMTDGILLAETQTDPLLRAYDTLIIDEAHERSLNIDF
LLGYLREILPKRPDLKLIVTSATIDAERFARHFGTEAKPAPVIEVSGRLYPVEIRYRPVE
ETSPAIRAAQGTPPARERMKGAREAERDLMDAIVDAVDELCREGGGDVLVFLPGEREIRE
AAEALRKHHPPHTEILPLFARLSAAEQARVFKPSNARRIVLATNVAETSLTVPGIRYVVD
TGLARVKRYSYRNKVEQLQVEPISQAAANQRAGRCGRVADGICIRLYGETDFQVRPRFTD
PEILRSSLAAVILRMKSLHLTDIETFPFIEPPPGRAIADGYQLLAELGAVDDGNALTPLG
SELARLPLDPRVGRMILAAREHDALAEMLVIASALSVQDPRDRPVEAQDQADQAHRRFAD
ERSEFLQWLKIWRWFTEAVAHKKSNRQLVDACREQFLSHLRLREWRDVHSQLLTVVREQG
WRINESEATYEQIHLALMTGLIGNLGLKADDEPHYLGARGIKFFLWPGSTLAKKAGRWVM
AAELVETSRLYARCLAKIEPEWIEKVAAHLLKKQLSEPHWEKRAAQVVAFERATLFGLPV
YHRRRVAFGQQDPRRARDLFIRGALVEGEFETRLPFFAHNRKLLADIEQLEHKSRRQDVL
VDDELIFAFYDQAIPKQIHTGAAFERWYRNEVRASGQPEEKLRLLFLSRDDLMRHEAAGI
TTDLFPKRMSMAGVEMGLAYHFEPGSPRDGVTLAVPLYALNQVDARRAEWLVPGMLKEKV
HLLLKSLPQKLRRHCVPLPEYAAAFVERHEARAASARAGVAQGESLRGEGGLLEALIADV
RAATQVALKTTDFKLETLPAHLFMNFKVIDEHGRQLAMGRNLAQLRAELGADAQREFQKL
AAGAGSTREPGAKPAAAATPVASVAPVAPGGAPGQGGPRLQQAPARAPGEAGGGAETTAL
YENLTTWNFGKLPELLEIRRRGQTLFGYPALVDRTTHCDVEVFDSPEDAARAHRSGLRRL
FALQLREPIKYLEKNLPGLREMALQFMPLGTQEALRDQLIEMALDRACLQEPLPDDDASF
HARRDEGKGRLSLLAQEIARLVGQILADYAAVTKKLAQAKPYAAAYADLQQQLQGLIGKR
FIVDTPYAQLTHFSRYLKGMALRIDKLKADPARDARLAADLQPLVQQYQRASSARGGVAD
ARLAEFRWLLEELRISLFAQELRTPMPVSVKRLYKVWESMQR
NT seq
4089 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaacgtacccaatagtccggccgccgatgagggcgggcgcggaaaaccttcccgc
ccgcgccgggacggcccgcgcgcatcgccgattccgcccaacccgattccgccgatcgag
tttccgcccgcgctgcccgtcacgggccggcgcgaggagatcgcgcgtgccatccgcgac
catcaggtcgtcatcgtgtcgggcgagaccggctccggcaaaaccacgcagttgccgaag
atatgcctcacgctcggccgcgggcggggggccggcggcagcggcctcatcggccacacg
cagccgcgccggatcgcggcttccgccacgggccggcgtatcgcggaggaactcggcacg
ccgttcggcgaggtcgtcggctacaaggtgcgcttcaacgacaatctcgcgccgggcgcg
tcggtgaagctgatgacggacggcatcctgctcgccgagacgcagaccgatccgcttttg
cgtgcatacgacacgctgatcatcgacgaagcccacgagcgcagcctcaatatcgatttt
ctgctcggctatctgagggagatcctgccgaagcggcccgatctgaagcttatcgtgacc
tctgcgacgatcgacgccgagcgtttcgcgcgccatttcggcacggaagcgaagcccgcg
cccgtcatcgaggtgagcgggcggctctatccagtggaaatccgctatcggccggtcgag
gagacgagcccggcgatcagggccgcccagggcacgccgcccgcccgcgagcgcatgaag
ggcgcacgcgaggccgagcgcgatctgatggatgcgatcgtcgatgccgtggacgaactt
tgccgggagggcggcggcgacgttctcgtgttcctgcccggcgagcgcgagattcgcgag
gcggccgaggcgctgcgcaagcatcatccaccgcacacggagatcctcccgcttttcgcg
cgcctctcggcggccgagcaggcccgcgtcttcaagccgtcgaacgcgcggcgcatcgtg
ctcgcaacgaacgtcgccgagacctcgctgacggtgccgggcatccgttacgtcgtcgac
acgggcctggcgcgcgtgaagcgctactcgtatcgcaacaaggtcgaacaactgcaagtc
gagccgatctcgcaggcggccgccaatcagcgtgcgggccgctgcgggcgggtggcggac
gggatctgcattcggctatatggcgaaacggatttccaggtccggccgcgctttaccgac
cctgaaattttgcgctcgtcgctcgcggcggtcatccttcggatgaaatcgctgcacctg
accgacatcgagacgtttccgttcatcgagccgccgccggggcgcgcgatcgccgacggc
taccagttgctcgccgagctgggcgcggtcgacgacggcaatgcgctcacgccgctcggc
agcgaactcgcgcgcctgccgctcgacccgcgcgtgggacgcatgattctggccgcgcgc
gagcacgatgcgctcgcggaaatgctcgtgatcgcgagcgcgctgtcggtgcaggatccg
cgcgatcggcccgtcgaagcgcaggatcaggccgaccaggcccatcggcgttttgccgac
gagcgctcggagttcctgcagtggctcaagatctggcgctggttcaccgaagcggtggcg
cacaagaagtcgaaccggcagctcgtggatgcttgccgcgagcagttcctgtcgcacctg
cggctgcgcgaatggcgcgacgtccattcgcagttgctgaccgttgtgcgcgagcagggc
tggcgcatcaacgagagcgaagcgacttacgagcagatccatctggcgttgatgacgggg
ctcatcggcaacctcggtttgaaggccgacgacgagccgcactatctgggtgcgcgcggg
atcaagttctttctgtggcccggctcgacgctcgcgaagaaggccggccgctgggtcatg
gcggccgaactcgtcgagacgagccggctttacgcgcgctgtcttgcaaagatcgagccg
gaatggatcgaaaaggtcgccgcgcacctgctcaaaaagcagctctccgagccgcattgg
gaaaagcgcgcggcccaggtagtcgcattcgagcgggcgacgctgttcggattgccggtc
taccatcggcggcgcgtggcgttcggccagcaggatccacggcgcgcacgcgatctcttc
attcggggcgcgctcgtggagggcgaattcgagaccaggctcccgttttttgcgcacaac
cgcaagcttctggccgatatcgagcagctcgagcacaagtcgcggcggcaggacgtgctc
gtcgacgacgaactcattttcgcgttctacgatcaggcgattccgaagcagatccatacg
ggtgccgcgttcgagcgctggtaccgcaacgaggtgcgcgcgagcggccagcccgaggaa
aagctgcggcttctttttctgtcgcgcgatgacctcatgcggcacgaggcggccggcatc
acgaccgatctctttccgaagcgcatgtcgatggccggtgtcgaaatggggctggcctac
cacttcgagccgggctcgccgcgtgacggcgtgacgctcgccgtgccgctctatgcgctc
aatcaggtcgacgcccgccgcgccgaatggctcgtgcccgggatgctgaaggaaaaagtg
catctgctgctgaaatcgctgccacagaagctgcgccgccactgcgtgccgctgccggag
tacgcggccgcctttgtcgaacggcatgaggcgcgcgcggcaagcgcccgcgcgggcgtc
gctcagggggaatcgctgcgcggcgagggcgggctcctggaggcgttgatcgccgacgtg
cgcgcggcgacgcaagtcgcactcaaaaccaccgatttcaagctcgagacgctgccggca
cacctgttcatgaacttcaaggtgatcgacgagcacggccggcaactggccatggggcgc
aacctcgcgcaactgcgcgccgagctcggcgccgacgcccagcgcgaattccagaagctt
gcagccggcgcgggaagtacccgggagccgggggcgaagccggctgcggcggccacgccg
gttgcatccgttgcgccggttgcgccgggcggcgcgcccggccagggcgggccgcggctg
cagcaggcgccggcgcgcgcacccggcgaggcgggcggtggcgccgagacgaccgcgctc
tatgagaacctgacgacctggaatttcggcaagctgccggagctgctcgaaatccgccgc
cgcgggcagacgcttttcggctacccggcgctcgtcgatcgcacgacccattgcgacgtc
gaggtattcgattcgcccgaagacgccgcgcgggcgcatcgctcgggcttgcggcgcctc
ttcgcattgcaactgcgcgagccgatcaagtatctcgaaaagaatctgccgggcctgcgc
gaaatggcgctccagttcatgccgctcggtacgcaagaggcgctgcgcgatcagctgatc
gagatggcgctcgaccgtgcctgcctgcaggaaccattgcccgatgacgatgcgagcttt
catgcgcgccgcgacgaaggcaagggacgcctgtcgctgcttgcgcaggaaatcgctcgg
ctcgtcgggcagattctggcggactacgcggcggtgacgaagaagcttgcgcaggcaaaa
ccctatgcggcggcctatgcggatttgcagcagcagttacagggtctgatcggaaagcgc
tttatcgtggatactccctatgcgcagctgacgcatttttcccgttatctgaagggcatg
gcgttgcgcatcgacaagctgaaagccgacccggctcgcgatgcgcggcttgccgccgat
ttgcagccgctcgtacagcaataccagcgtgccagctcggcgcgcggcggcgtggccgat
gcgcgcctcgccgaatttcgctggctgctggaggaactgcgcatttcgcttttcgctcag
gaactgcgtacgcccatgccggtgtcggtcaagcggctttacaaggtgtgggagtcgatg
cagcgctga
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