KEGG   Trinickia caryophylli: U0034_05840
Entry
U0034_05840       CDS       T09722                                 
Symbol
tssM
Name
(GenBank) type VI secretion system membrane subunit TssM
  KO
K11891  type VI secretion system protein ImpL
Organism
tcar  Trinickia caryophylli
Pathway
tcar03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:tcar00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    U0034_05840 (tssM)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:tcar02044]
    U0034_05840 (tssM)
Secretion system [BR:tcar02044]
 Type VI secretion system
  Imp/Vas secretion system core components
   U0034_05840 (tssM)
SSDB
Motif
Pfam: IcmF-related_N IcmF-related IcmF_C IcmF_helical MFS_1 OAD_gamma
Other DBs
NCBI-ProteinID: WQE12918
LinkDB
Position
1:1279422..1283303
AA seq 1293 aa
MQRFLNALTHKITMTVFGLVVIAAILFGGALWLEIDLEWPALVFGALLALVFIVWLWRRI
AARRANRKLGEMIEQQAEAAKTAAPQQPGKGAELDVLRTRLVDAVRTIKTSKIGQISGGS
ALYELPWYIVIGNPAAGKSSAVLNSGLQFPFADKHDAVIHGIGGTRNCDWFFTTEGILLD
TAGRYSVHEEDRSEWLGFLGLLKRYRPKAPINGIIVTASIAELTSSRPDATINLARSLRQ
RVQELTEKLEVFAPVYVMFTKADLITGFSEFFSGSERNEYDRAWGATLPYQPDEKRDIVA
LFDERFEELYEGLKEISIAQMSINRGKALSPGQLSFPLEFLTIKPALRMFLATLFEENPF
QYKPILRGFYFTSALQEGQTTSAAAQRIAHRFGLGGDTLPAPRAASSKNGFFLRDLFSKV
IFADRQTVRQFASPAKTRLRYGTFFAFVAVLALALGGWTWSTIGNQQLVTNVQADLDNIV
RLQQNRNDLQSRLQAMDILEDRIEQLERFRRDRPLSVSLGLYQGDRIEQRLLAEYYRGVK
QLMLVPVSANLGAFLKEVDAHPDQLAPLTRPPESGAVPVSARTGSALAPAAQGGLYSDAS
PTNVEDAYNALKTYLMLSDKRHVEAAHLTDQLARFWRGWLETNRGNMSRDDMIRSAERMI
TFYLSRVSDDDWPMIEPNLSLVDQTRENLRRVVRGMPARQRVYEEIKARASTRFAPMTVA
RIVGENNTNLVAGSYAIPGTFTRDAWFEYVQPAIRDAATKELQAKDWVLNTASQDDLTLE
GSPEQIQKALVSMYKSDYAQHWQRFLQGISVQDFGSFDQAVATMNRLGDPQDSPIRKILE
TAYDQTAWDNPALASTTLQKAQKGMTGWFKRLFSSREQAARNAGVDIDAGAIIPSTSMGP
VGAAFTGLARIVAMHDNTSLLRGYMDTLSKTRTRFNLIKNQGDPGPGSRQLMQQTLEGNG
SELADSLKFVDEQMLNGLTDDQRKALRPLLVRPLMQAFAVVIGPASDEVNKIWTAQVYQP
FQASLATKYPFSSSAKVEAGAGEIAQIFGPEGAVSKFVGTTLGPLAVRRGDTLSPRTWGG
MGIALTPDFSGSFARWVAPLSGAAASGGQAAAEPQTVFQILPQPGSRTTEYTITIDGQQL
RYRNTPAQWMNFVWPNPQGAAGATLTATTFDGRTIQFVNEPGRYGLEKLINSAQRKRNAD
GTFDLSWSQGDVTVAFSMRIVSTSQPSSGKGDAPQQQSLRGTQLPVSVVDVAAARASAAA
AIGTPAASAPAAQTASTTPAAASAAATNPGAAQ
NT seq 3882 nt   +upstreamnt  +downstreamnt
atgcaacgctttctcaacgcgctcacccataaaatcacgatgacggtcttcgggctcgtc
gtcatcgcggcgatcctgttcggcggcgcgctgtggctggagatcgacctcgaatggccg
gcccttgtcttcggcgccctgctcgcgctcgtcttcatcgtctggctttggcggcgcatc
gcggcgcggcgagcgaaccgcaagctcggggagatgatcgagcagcaggccgaggcggcc
aaaacggccgccccacagcagccgggcaaaggcgccgaactcgacgtgctgcgcacgcgc
ctcgtcgacgccgtgcgcacgatcaagacatcgaaaatcggccagatctcggggggctcg
gcgctctacgaactgccgtggtacatcgtcatcggcaacccggcggccggtaaaagcagc
gcggtgctgaactcggggctgcagttcccgttcgccgacaagcacgatgccgtcattcac
gggatcggcggcacgcgtaactgcgactggtttttcacgaccgaaggtattctgctcgac
acggcgggccgctactcggtgcacgaggaagaccggtccgaatggctgggctttctcgga
ttgctcaagcgctaccggccgaaagcgccgatcaacggcatcatcgtgacggcgagcatt
gccgaactcacgtcgagccggcccgacgccacgatcaacctcgcacgcagcctgcgccag
cgtgtgcaggagctgacggaaaaactcgaggtcttcgcgcccgtctacgtgatgttcacg
aaggccgacctcatcacaggtttttcggagttcttcagcggcagcgagcgcaacgaatac
gatcgcgcatggggcgccaccctgccctatcaacccgacgaaaaacgcgacatcgtggcg
ctcttcgacgagcgcttcgaggagctctacgaagggctcaaggaaatcagcatcgcgcag
atgtcgatcaaccgcggcaaggccctctcgccaggccagttgagcttcccgctcgaattc
ctcacgatcaagccggccttgcgcatgttcctcgcgacgctgttcgaggagaacccgttc
cagtacaagccgattctgcgtggcttttacttcacgagcgcgctgcaggaagggcagacg
acgagcgcggcggcgcagcgcatcgcgcatcgcttcgggctcggcggcgatacgctgccc
gcaccgcgggcagccagttcgaaaaacggtttctttctgcgcgacctgttctcgaaggtc
atcttcgccgaccgccaaacggtgcggcagttcgccagcccggccaagacgcgcctgcgc
tacggcacgttcttcgcgttcgtcgccgtgctcgcgctcgcgctgggcggctggacctgg
tcgacgatcggcaaccagcagctcgtcacgaacgtgcaggccgacctcgacaacatcgtg
cggctgcagcagaaccgcaacgacctgcaatcgcgcctgcaggccatggatatcctcgaa
gaccggatcgagcagctcgagcgcttcagacgagaccgtccgctttcggtctcgctcggg
ctctaccagggcgatcgcatcgaacagcgtctgctggccgagtactatcgcggcgtcaag
cagttgatgctggtgccggtctcggcgaatctgggcgccttcctgaaggaagtcgacgca
catcccgaccagttggcgccgctcacacgcccgcccgagtcgggcgccgtgcccgtctcg
gcgcgcacgggcagcgcgctcgcgccggccgcgcaaggcgggctctacagcgatgcctcg
ccgaccaacgtggaagacgcctataacgcgctgaagacctacctcatgctgtcggacaag
cggcacgtcgaggcggcgcacctgaccgaccagctcgcgcggttttggcgcggctggctc
gaaacgaatcgcggcaacatgtcccgcgacgacatgatccgcagcgccgagcgcatgatc
acgttctacctctcgcgcgtatccgacgacgactggccgatgatcgagccgaacctctcg
ctcgtggatcagacgcgcgagaacctgcgccgggtggtacgcggcatgccggcacgccag
cgcgtctacgaagagatcaaggcccgtgcctcgacgcgcttcgcgccgatgacggtggcg
cgcatcgtcggcgagaacaacacgaacctcgtcgccggcagctatgcgattccgggcacg
tttacgcgcgacgcctggttcgagtacgtgcagccggccatccgcgatgccgcgacgaag
gaactgcaggccaaggactgggtgctcaacacggcgtcgcaggacgacctgacgctcgag
gggagcccggagcagatccagaaggcgctcgtcagcatgtacaagtcggactatgcgcag
cactggcagcgcttcctgcaaggcatctcggttcaggatttcggcagtttcgatcaggcc
gtcgccacgatgaaccgcctgggggatccgcaggactccccgatccgcaagatcctggag
acggcttacgatcagaccgcatgggacaacccggccctcgcttccaccacgctgcaaaaa
gcgcaaaagggcatgacgggatggttcaagcggctcttctcgtcgcgcgagcaggcggcc
aggaacgcaggtgtggatatcgacgcgggcgcgatcattccgtcgacgtcgatggggccg
gttggcgcggccttcacggggctcgcccgcattgtcgccatgcacgacaacacgtcgctg
ctgcgcggctatatggacacgctctcgaagacccgcacgcgcttcaacctgatcaagaat
cagggggaccccggccccggctcgcggcagttgatgcagcaaacgctcgagggcaacggt
tcggagcttgccgattcgctcaagttcgtcgacgagcagatgctcaacgggctcaccgac
gatcagcgcaaggcgctgcggccattgctcgtgcgcccgctcatgcaggccttcgccgtc
gtgatcggcccggccagcgacgaagtcaacaagatctggaccgcgcaggtttatcagccg
ttccaggcgtcgctcgccaccaagtatccgttctcgtcgagcgcgaaggtcgaagccggc
gcgggtgaaatcgcgcagatcttcggccccgagggcgccgtgtcgaagttcgtcggcacg
acgctcggcccgctcgccgtgcgccgcggcgatacgctgagcccgcgcacgtggggcggc
atgggcatcgcgctcacgcccgatttctcgggcagcttcgcgcgctgggtcgcgccgctc
tccggcgcggccgcgagcggcggccaggccgcggccgagccgcagacggtgttccagatc
ctgccgcaaccgggctcgcgtacgaccgagtacacgatcacgatcgacgggcagcaactg
cgctaccgcaacacgccggcgcaatggatgaacttcgtctggccgaacccgcaaggcgcg
gccggcgcgacgctgacggccacgacgttcgacggccgcacgatccagttcgtcaacgag
ccggggcgctatggcctcgaaaagctgatcaactcggcgcagcgcaagcgcaacgccgac
ggcaccttcgacctttcgtggtcgcagggtgatgtgacggtggcgttcagcatgcgcatc
gtcagcacctctcagccttcgagcggcaagggcgacgcgccgcagcagcagagcctgcga
ggcacacagttgccggtttcggtcgtcgacgtggctgccgcgcgcgcaagcgcggcagcc
gcgatcggcacgccggctgcttccgcgccggcggcacagaccgcatcgaccaccccggcc
gcggccagtgccgcagccacgaacccgggagccgcccaatga

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