Trinickia caryophylli: U0034_08110
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Entry
U0034_08110 CDS
T09722
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
tcar
Trinickia caryophylli
Pathway
tcar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U0034_08110 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcar03019
]
U0034_08110 (recQ)
03400 DNA repair and recombination proteins [BR:
tcar03400
]
U0034_08110 (recQ)
Enzymes [BR:
tcar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
U0034_08110 (recQ)
Messenger RNA biogenesis [BR:
tcar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
U0034_08110 (recQ)
DNA repair and recombination proteins [BR:
tcar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
U0034_08110 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
ResIII
HHH_5
Motif
Other DBs
NCBI-ProteinID:
WQE13324
LinkDB
All DBs
Position
1:complement(1761613..1763460)
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AA seq
615 aa
AA seq
DB search
MSRPLEILNEVFGYPAFRGHQRDIVEHVAGGGDCLVLMPTGGGKSLCYQIPSLVRNEAGL
GAGIVVSPLIALMQDQVAALTELGVRAAYLNSTLSGAEAASIERALRAGELDLLYVAPER
LMTPRFLDLLERARIGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPAVPRIALTATAD
AITRDEIVHRLALDDARIFVSSFDRPNIRYRIVEKDNARSQLLEFIRAEHMNADGTSDAG
VVYCLSRRKVEETAEWLKAQGLRALPYHAGMEFEVRQRHQEMFQREEGIVMCATIAFGMG
IDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGLPANAWMAYGLGDVVQQRKMIDESDADD
AHKRVQSGKLDALLGLCETASCRRVRLLAYFGEASEPCGNCDTCLEPPASWDATREAQMA
LSCVFRAQRASGFNFGAGHLIDILRANRTEKVLQRGHEALSTFGIGAELSDAEWRAVFRQ
LVAFGYLAVDHDGFGALVLTEASKPVLKGEQKVTLRRYVKPQRTRQGSGRSAQRADPAAG
MGPRERACWERLRAWRTDTAKRDGVPAYLIFHDATLAEIARNAPDTVDDLRHIPGIGARK
LERFADELLDVVGAN
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgccctctggaaatcctcaatgaagtcttcggttaccccgctttccgtgggcac
cagcgcgatatcgtcgagcatgtcgcaggcggcggcgactgtctcgtgctcatgccgacg
ggcggtggcaagtcgctttgctatcagatcccgtcgctagtgcgcaacgaagccgggctt
ggcgcgggcatcgtcgtctcgccgctgatcgcgctgatgcaggatcaggtcgcggcgctg
accgaactcggcgtacgcgcggcgtatctgaactcgacgctctcgggagccgaggccgcc
tcgatcgagcgggcgctgcgggcgggcgagctcgatttgctctacgtcgcgcccgagcgc
ctgatgacgccgcgttttctcgatttgctcgaacgtgcgcgcatcggccttttcgcgatc
gacgaggcgcactgcgtgtcgcagtgggggcacgacttccgccccgagtacatccagctg
tcggtgctgcacgagcgcttcccggcggtgccgcgcatcgcgctcacggccacggcagac
gcgatcacgcgcgacgagatcgtgcaccgactggcgctcgatgacgcccggatcttcgtc
tcgagcttcgaccggccgaacatccgctaccgcatcgtcgagaaggacaatgcgcgctcg
caactgctcgagttcatccgtgcggagcatatgaacgcggacggcacgagcgatgcgggc
gtggtgtactgcctgtcgcgccgcaaggtcgaagagacggccgagtggctcaaggcgcag
ggcctgcgcgcgttgccttaccacgcggggatggagttcgaggtgcgccagcgccatcag
gagatgttccagcgcgaggagggcatcgtgatgtgcgcgacgatcgccttcggcatgggc
atcgacaagcccgacgtgcgtttcgtcgctcacctcgatttgccgaagagcgtcgaaggt
tattaccaggagacggggcgtgcgggacgcgacggcctgccggctaatgcctggatggct
tatgggctcggcgacgtcgtgcagcagcgcaagatgatcgacgaatcggatgcggacgat
gcccacaagcgcgttcagtccggcaagctcgatgcgctgctcggcctgtgcgagacggcc
tcgtgccgccgcgtgcggcttctcgcctacttcggcgaggcgagcgagccgtgcggcaat
tgcgacacctgcctggagccgcctgcatcgtgggatgcgacgcgcgaggcgcagatggcg
ctgtcatgcgtctttcgcgcccagcgcgcaagcggcttcaacttcggcgcaggccatctg
atcgacattctgcgcgcaaaccgcaccgaaaaagtcctgcagcgcgggcacgaggcgctg
agcacgttcggcatcggcgcggaactctcggatgccgagtggcgcgcggtttttcgccag
ctcgtcgcattcggctacctggcagtcgatcacgacggcttcggtgcgctcgtgttgacc
gaggcgagcaagcccgtgctcaagggcgagcaaaaggtgacgctcaggcgctacgtgaag
ccgcagcgtacgcggcagggctcgggacgcagcgcgcagcgcgccgatccggcggcaggc
atggggccgcgcgagcgtgcctgctgggagcggctgcgcgcctggcgcaccgacacggcc
aaacgcgacggcgtgccggcctatctgatcttccatgatgcgacgctcgccgagatcgcg
cgcaatgcgcccgataccgtcgacgacctgcggcacattccgggcatcggcgcgcgcaag
ctcgaacgtttcgctgacgaactactggacgtcgtcggggcgaattga
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