Trinickia caryophylli: U0034_08150
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Entry
U0034_08150 CDS
T09722
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tcar
Trinickia caryophylli
Pathway
tcar03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tcar00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
U0034_08150 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tcar03021
]
U0034_08150 (rpoC)
03400 DNA repair and recombination proteins [BR:
tcar03400
]
U0034_08150 (rpoC)
Enzymes [BR:
tcar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
U0034_08150 (rpoC)
Transcription machinery [BR:
tcar03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
U0034_08150 (rpoC)
DNA repair and recombination proteins [BR:
tcar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
U0034_08150 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Peptidase_M23
Apocytochr_F_C
PYNP_C
Motif
Other DBs
NCBI-ProteinID:
WQE13332
LinkDB
All DBs
Position
1:complement(1776974..1781239)
Genome browser
AA seq
1421 aa
AA seq
DB search
MKALLDLFKQVQQEEVFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVIEPGMTPLKARQIMTEEDYYNKVEEYGDEFRAEM
GAEGVRELLRAINIDEQVEQLRTELKNTGSEAKIKKIAKRLKVLEAFQRSGIKPEWMVLE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKLMALELFKPFIFHKLEVMGVATTIKAAKKEVENQTPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLASNNVLFPANGDPSIVPSQDIVLGLYYATREAVNGKGEGMSFTGVSEALRAYENK
EVELASRVNVRITEMVANEDTSEGAPKFVPKISLYATTVGRAILSEILPPGLPFSVLNKP
LKKKEISRLINTAFRRCGLRETVIFADQLMQSGFRLATRAGISICVDDMLVPPQKEVIVG
DAAKKVKEYDRQYMSGLVTSQERYNNVVDIWSATSEAVGKAMMEQLSTEPVVDRDGKEVR
QESFNSIYMMADSGARGSAVQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFIS
THGARKGLADTALKTANSGYLTRRLVDVTQDLVVTEDDCGTSNGVAMKALVEGGEVVEAL
RDRILGRVAVADVVNPETQETLYESGTLLDEVAVEEIERLGIDEVRVRTPLTCETRYGLC
ASCYGRDLGRGSLVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTAVASSVEAKSN
GTVRFTSTMRYVTNAKGEQIVISRSGEAMITDDHGRERERHKVPYGATLLQLDGAQIKAG
TQLATWDPLTRPIITEYGGTVKFENVEEGVTVAKQIDDVTGLSTLVVIDVKRRGSQAAKS
VRPQVKLLDASGEEVKIPGTEHSVQIGFQVGALITVKDGQQVQVGEVLARIPTESQKTRD
ITGGLPRVAELFEARSPKDAGILAEVTGTVSFGKDTKGKQRLVITDLEGNQHEFLIAKEK
QVLVHDGQVVNKGEMIVDGPADPHDILRLQGIEALSRYIVDEVQDVYRLQGVKINDKHIE
VIVRQMLRRVQITDNGDTRFIPGEQVERSDMLDENDRMTADDKRPASYENVLLGITKASL
STDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAFHKARKTKEA
SDRERYDQIAAEEAFEFGTPAGESPATDAPVEEPHQQHPTE
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctctgctcgatctattcaagcaagtccaacaagaagaagttttcgacgcgatc
aagatcggtctcgcttcgcccgacaagatccgttcgtggtcgttcggcgaagtcaagaag
cccgagacgatcaactaccgcacgttcaagcccgagcgggacggcctcttctgcgcgaag
atcttcggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcttgaagcac
cgcggcgtgatctgcgagaagtgcggcgtggaagtcacgctcgccaaggtgcgccgcgag
cgcatgggccacatcgaactggcctcgcccgtcgcgcacatctggttcctgaagtcgctg
ccgtcgcgtttgggcatggtgctcgacatgacgctgcgcgacatcgagcgcgtgctgtac
ttcgaagcgtacgtggtgatcgaaccgggcatgacgccgctcaaggcgcggcagatcatg
accgaagaggattactacaacaaggtcgaggagtacggtgacgaattccgcgccgagatg
ggcgcggaaggcgtgcgcgagctcctgcgcgcgatcaacatcgacgagcaggtcgagcaa
ctgcgcaccgagctcaagaacacgggctcggaagcgaagatcaagaagatcgccaagcgc
ctgaaggtgctcgaggcgttccagcgctcgggcatcaagcccgagtggatggtgctcgag
gtgctgcccgtgctgccgcccgagctgcgtccgctcgtgccgctcgacggcggccgcttc
gcgacctccgacctgaacgacctctatcgccgcgtcatcaaccgtaacaaccggttgaag
cgtctgctcgagctcaaggcgcccgagatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagccgtcgactcgctgctcgacaacggccgccgcggcaaggccatgaccggtgcgaac
aagcgcccgctcaagtcgctcgccgacatgatcaagggcaagggcggccgcttccgtcag
aacctgctcggcaagcgcgtcgactactcgggccgttcggtcatcgtggtgggcccgacg
ctgaagctgcaccagtgcggtctgccgaagctgatggcgctcgaactcttcaagccgttc
attttccacaagctggaagtgatgggcgtggccacgacgatcaaggccgcgaagaaggaa
gtcgagaaccagacgccggtggtgtgggacatcctcgaagaggtgatccgcgagcacccg
gtcatgctgaaccgtgcgccgacgctgcaccgtctcggcatccaggcgttcgagcccgtg
ctgatcgaaggcaaggcgattcagctgcacccgctcgtttgcgcggcgttcaacgccgac
ttcgacggcgaccagatggccgttcacgtgccgctgtcgctcgaagcgcagatggaagcg
cgcacgctgatgctcgcctcgaacaacgtgctcttcccggctaacggcgatccgtcgatc
gtgccgtcgcaggatatcgtgctcggtctttactacgccacgcgcgaagccgtcaacggc
aagggcgagggcatgtcgtttacgggcgtgtcggaagcactgcgcgcgtacgagaacaag
gaagtcgagctcgcttcgcgtgtgaacgtgcgcatcaccgagatggtggccaacgaggac
acctccgagggcgcgcccaagttcgtgccgaagatctcgctttacgcgacgacggtcggc
cgcgcgattctgtccgagatcctgcccccggggctgccgttctcggtgctgaacaagccg
ctcaagaagaaggaaatctcgcgcctcatcaatacggccttccgccgttgcgggctgcgc
gaaacggtcatcttcgccgatcagctcatgcagtcgggcttccgcctcgccacgcgcgcc
ggcatctcgatctgcgtcgacgacatgctcgtgccgccgcagaaggaagtgatcgtcggc
gacgccgcgaagaaggtgaaggagtacgaccgtcagtacatgtcgggtctcgtcacctcg
caagagcgctacaacaacgtggtcgatatctggtcggccacgtcggaagcggtcggcaag
gcgatgatggagcagctctcgacggagcccgtcgtcgatcgcgatggcaaggaagtgcgc
caggagtcgttcaactccatctacatgatggccgactcgggtgcgcgcggctccgcggtg
cagatccgtcagctcgccggtatgcgcggcctgatggccaagccggatggctcgatcatc
gagacgccgattacggcgaacttccgcgaaggcctgaacgtgctgcagtacttcatctcg
acgcacggcgcgcgtaagggtctggccgatacggcattgaagacggcaaactcgggctac
ctgacgcgtcgtctcgtcgacgtgacgcaggatctcgttgtgaccgaagacgattgcggc
acgtcgaacggcgtggcgatgaaggcgctcgtcgaaggcggtgaagtcgtcgaagcgctg
cgcgaccggattctcggccgcgtggcggtggcggacgtcgtcaaccccgagacgcaggaa
acgctgtacgaatcgggcacgctgctcgacgaagtggcggtcgaagagatcgagcgcctc
gggatcgacgaagtgcgcgtgcgtacgccgcttacctgcgaaacgcgctatggcctgtgc
gcctcgtgctacggccgcgacctcggccgtggttcgctcgtgaatgtcggcgaggcagtc
ggtgtgatcgccgcgcagtcgatcggcgagccgggcacgcagctcacgatgcgtacgttc
cacatcggtggcgcggcatcgcgtacggcggtggcttcgtcggtcgaagcgaagagcaac
ggtacggtgcgcttcacgtcgacgatgcgttacgtgacgaatgcgaagggcgagcagatc
gtcatctcgcgttcgggcgaggcgatgatcaccgacgatcacggccgcgagcgcgagcgg
cacaaggtgccgtacggcgcgacgctgctgcagctcgacggtgcgcagatcaaggcgggc
acgcagctcgcgacgtgggatccgctcacgcgtccgatcatcaccgagtacggcggtacg
gtgaagttcgagaacgtcgaggaaggcgtcacggttgccaagcagatcgacgacgtgacg
ggtctttcgacgctcgtcgtgatcgacgtgaagcgccgcggttcgcaggcggccaagagc
gttcgcccgcaggtgaagctgctcgacgcaagcggcgaggaagtgaagatccccggcacc
gagcattcggtgcagatcggcttccaggtcggcgcgctgatcacggtgaaggatggccag
caagtgcaagtcggtgaggtgctcgcgcggattccgacggaatcgcaaaagacgcgtgac
attaccggtggtctgccgcgtgtggccgaactgttcgaagcgcgctcgccgaaggatgcg
ggcatcctcgccgaagtcacgggtaccgtgtcgttcggtaaggacacgaagggcaagcag
cgtctcgtcatcaccgatctcgagggcaaccagcacgagttcctgatcgcgaaggaaaag
caggtgctcgtccacgatggtcaagtcgtcaacaagggcgaaatgatcgtggacggcccg
gccgatccgcacgacatcttgcgtttgcaaggtatcgaggcgctgtcgcgctacatcgtc
gacgaagtgcaggacgtctatcgtctgcagggcgtgaagatcaacgacaagcacatcgaa
gtcatcgtgcgtcagatgctgcgccgtgtgcagatcaccgacaacggcgatacgcgtttc
attccgggcgaacaagtcgagcggtcggacatgctcgacgagaacgatcggatgaccgcg
gacgacaagcgcccggcgtcgtacgaaaacgtgctgctcggtatcacgaaggcgtcgctg
tcgaccgactcgttcatctcggcggcatcgttccaggaaacgacgcgcgtgctgaccgag
gcggcgatcatgggcaagcgcgacgatctgcgcggcctgaaggaaaacgtgatcgtcggc
cgtctgattccggccggtacgggtctcgcgttccacaaggcccgcaagacgaaggaagcg
tccgatcgcgagcgctacgatcagatcgcggccgaagaggcattcgagttcggtacgccg
gcgggagagtcgccggccacggacgcgcctgtcgaggagccgcatcagcagcacccgacc
gagtaa
DBGET
integrated database retrieval system
