Trinickia caryophylli: U0034_09545
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Entry
U0034_09545 CDS
T09722
Name
(GenBank) phytoene/squalene synthase family protein
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
tcar
Trinickia caryophylli
Pathway
tcar00100
Steroid biosynthesis
tcar00909
Sesquiterpenoid and triterpenoid biosynthesis
tcar01100
Metabolic pathways
tcar01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
tcar00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
U0034_09545
09109 Metabolism of terpenoids and polyketides
00909 Sesquiterpenoid and triterpenoid biosynthesis
U0034_09545
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
tcar01006
]
U0034_09545
Enzymes [BR:
tcar01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
U0034_09545
Prenyltransferases [BR:
tcar01006
]
Terpene biosynthesis
Squalene/phytoene synthase
U0034_09545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
Motif
Other DBs
NCBI-ProteinID:
WQE13575
LinkDB
All DBs
Position
1:complement(2116458..2117540)
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AA seq
360 aa
AA seq
DB search
MSQTARGYLLGPLLKGVSRSFYLTLRVLPAGMRDPIALAYLLARAADTIADTTLIAPPKR
LELLLALRERVNASGGDDEAARRIGAEAAAHQTVTDEKVLLESIGPALALIDGLDATDRA
AVREIVTTLTTGMEFDLRTFPDERSGEIAALGELAELDRYTYLVAGCVGEFWSKMTLAHL
PGSFKDTPARMIGRGVRFGKALQMTNVLRDCARDLRIGRCYLPASMLARHGLTPAMLLTA
DASMRARPLMLELVEHTLALYDDALAYTLAISRGAIRLRLACIWPIAIGLETLRLLVDND
RWLDPQAISKIGRKQVYRIMARSVVAVASDTALRAWIGGLARRVRMRMAAPASANCAAVK
NT seq
1083 nt
NT seq
+upstream
nt +downstream
nt
atgtctcagaccgctcgaggctatctgctcggcccgctgctcaagggcgtttcacgctcg
ttctacctcacgctgcgtgtgctgccggccggcatgcgcgatccgatcgcgcttgcgtat
ctgctggcgcgggccgccgatacgatcgcggacacgaccctgatcgcgcctccgaagcgg
ctcgaactactgcttgcgttgagggagcgcgtgaatgcttcgggcggcgacgacgaagcc
gcgcgccggatcggggccgaagcggcggcacatcaaaccgtgaccgacgaaaaggtgctg
ctcgaatcgatcgggccggcgcttgctctgatcgacgggctcgacgccaccgatcgcgcc
gccgtgcgtgagatcgtgacgacgctgacgacgggcatggagttcgacctgcgcacgttt
cccgacgagcgctcgggtgagatcgcggcgctcggcgagctggccgaactcgatcgctac
acgtaccttgtggccggctgcgtgggcgaattctggtcgaagatgacgctcgcgcatctg
ccgggcagcttcaaggacacgcccgcgcgaatgatcgggcgcggcgtgcgcttcggcaag
gcattgcagatgacgaacgtgctgcgcgactgcgcgcgcgacctgcgcatcggccgctgc
tatctgcccgcgtcgatgctcgcgcgccatggcctcacgccggcgatgttgctgacggcg
gatgcctcgatgcgcgcgcggccgctgatgctcgaactcgtcgagcacacgcttgcgctc
tatgacgacgcgctggcctatacgctggcgatttcacgcggcgcgatccggctgcggctc
gcctgcatctggcccatcgcgatcgggctcgagacgttgcgactgctcgtcgacaacgac
cgctggctcgatccgcaagcgatatcgaagatcggccgcaagcaggtgtatcggatcatg
gcgcgctcggtggtggcggtggcctccgacacggcgttgcgcgcgtggatcggcgggctc
gcgcgccgtgttcgcatgcgcatggccgcgccggcaagcgcgaattgcgcggccgtgaaa
taa
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