Trinickia caryophylli: U0034_11305
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Entry
U0034_11305 CDS
T09722
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
tcar
Trinickia caryophylli
Brite
KEGG Orthology (KO) [BR:
tcar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tcar03032
]
U0034_11305
03400 DNA repair and recombination proteins [BR:
tcar03400
]
U0034_11305
Enzymes [BR:
tcar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
U0034_11305
DNA replication proteins [BR:
tcar03032
]
Prokaryotic type
DNA Topoisomerases
U0034_11305
DNA repair and recombination proteins [BR:
tcar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
U0034_11305
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
MBD
Motif
Other DBs
NCBI-ProteinID:
WQE10398
LinkDB
All DBs
Position
1:2511949..2513094
Genome browser
AA seq
381 aa
AA seq
DB search
MPATVLLSSSPRAVPRAGAVPRGAAAADPRSGTGGAGAADLPPGLRHVDDRRPGITRKLV
RGHFAYFDPSGRRIRDRDEIARIDALAIPPAYTDVWICPDPLGHLQATGRDARARKQYRY
HPQWRETRDATKYERMAAFGDALPKIRARIRRDLRLPGMPWGKVVATVVRLLDITLVRVG
SPEYARENNSYGLTTLRKRHAAVRAGHLRFRFRGKSGVEHDIDVDDPRIARIVRRCLDLP
GHELFQYIDEAGMRRPVGSSDINDYLREASGADFTAKDYRTWAGSVLALAALRKIEPRGT
ARHVRSHVVETIKSVAATLRNTPAVCRRCYVHPTVIDAFEAGELHALPKGRTRQGLKADE
AAFAALLRREKRRRGRGGAAR
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
atgccagcaaccgtcttgttgtcgtcctccccgcgcgcggtgccgcgggccggcgctgta
ccgcgaggcgctgcggcagccgatccgcgctccggcacaggcggagcgggtgccgctgat
cttccgccggggctgcgccatgtcgacgaccgccggcccggcatcacgcgcaagctcgtg
cgcgggcatttcgcttacttcgatcccagtggccggcgcattcgcgatcgcgacgaaatt
gcgcgcatcgatgcgctggcgattccgcccgcctatacggacgtctggatctgccccgat
ccgctcggccatcttcaggccaccgggcgcgacgcgagagcacgcaagcaatatcggtat
caccctcagtggcgcgagacgcgcgatgcgacgaagtacgagcgcatggcggcattcggc
gatgcactgccgaaaatccgcgcgcgtatccggcgcgatctgcggctgccgggcatgccg
tgggggaaagtggtcgcgacggtcgtgcggctgctcgacatcacgctcgtgcgtgtgggc
agtcccgagtacgcgcgggagaacaattcatacggactgacgacgctgcgcaagcgccat
gcggccgtgcgcgccgggcatctgcgttttcggtttcgcggcaagagcggcgtggagcac
gacatcgacgtggacgatccgcgcatcgcgcgcatcgttcggcgctgcctcgatctgccg
gggcatgaactcttccagtacatcgacgaggcgggtatgcgccggcccgtgggatcgtcg
gacatcaacgattatctgcgcgaagcgagcggcgccgatttcacggcgaaggactaccgc
acgtgggcgggcagcgtgctcgcgctcgccgcgctgcgcaagatcgagccgcggggaacg
gcccggcatgttcgcagccacgtggtggagacgatcaaaagcgtggctgccaccctgcgc
aacacgccggctgtctgccggcgctgctatgtgcatcccacggtaatcgatgcgttcgag
gccggtgagctgcatgcgctgcccaaagggcgcacgcggcaggggctgaaggccgacgaa
gcggcttttgcggcgttgctcaggcgagagaagcggcggaggggacggggaggggcggcg
aggtag
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