KEGG   Trinickia caryophylli: U0034_11760
Entry
U0034_11760       CDS       T09722                                 
Name
(GenBank) sigma-54 dependent transcriptional regulator
  KO
K10126  two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD
Organism
tcar  Trinickia caryophylli
Pathway
tcar02020  Two-component system
Brite
KEGG Orthology (KO) [BR:tcar00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    U0034_11760
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02022 Two-component system [BR:tcar02022]
    U0034_11760
Two-component system [BR:tcar02022]
 NtrC family
  DctB-DctD (C4-dicarboxylate transport)
   U0034_11760
SSDB
Motif
Pfam: Sigma54_activat Response_reg Sigma54_activ_2 HTH_8 AAA_5 AAA_16 HTH_50 AAA_2 TPP_enzyme_C
Other DBs
NCBI-ProteinID: WQE13699
LinkDB
Position
1:2619214..2620593
AA seq 459 aa
MTDSLPVIFIEDDELVRRASVQSLQLAGFEVVGYPSVESAREALDQSGSAGPGAIVSDIR
LPGASGLALLEHCREHAPDVPVILVTGHGDISMAVQAMRDGAYDFVEKPFASERLIETVR
RALEKRRLLLENVALRRELAERDALVPRIIGRSPAIEQVRRLVAKVAQTDASVLINGDTG
AGKELIARSLHELSPRRAKPFVAVNCGALPEPMFESEMFGYEPGAFTGAAKRRIGKLEYA
SGGTLFLDEIESMPLALQVKLLRVLQDGVLERLGSNQPIRVDCRVIAAAKGDMAEHVAAG
TFRRDLLYRLNVVTIALPPLADRREDIVPLFEHFVLEAAVRYQCAAPVLTERQRARLEER
DWPGNVRELRNAAERFVLGIADASSPIGTASTAQPGAASMPLKERVERFERTVIADALEQ
TGGAVAAAADLLEIGKATLYEKIKRYGLAERGEAGKEVG
NT seq 1380 nt   +upstreamnt  +downstreamnt
atgaccgacagccttcccgtaatcttcatcgaagacgacgaactggtgcgccgcgccagt
gtgcagagcctgcaactcgcgggcttcgaggtggttggctatccttccgtggagtccgcg
cgcgaggccctggaccaatcgggcagcgccgggccgggcgcgatcgtgagcgacatccgt
ttgccgggcgcgagcgggctcgcgctgctcgagcattgccgcgagcacgcccccgacgtg
ccggtcattctggtgacgggccatggcgacatctcgatggcggtacaggcaatgcgcgac
ggcgcctatgacttcgtggaaaagccatttgcgtccgagcggctcatcgagacggtgcgc
cgtgcgctcgaaaaacgccgcctgctgctcgagaacgttgcgttgcggcgcgagctcgcc
gagcgcgatgccctggtgccgcgcatcatcggccgcagcccggccatcgagcaggtgcgc
cggctcgtcgcgaaagtggcgcagaccgacgcttccgtgctgatcaacggcgataccggc
gccggcaaggaactgatcgcccgcagcctgcacgagctttcgccgcgccgggcgaaaccg
ttcgtcgcggtcaattgcggcgcgctgcccgagccgatgttcgaatccgaaatgttcggc
tacgagcccggcgctttcacgggtgcggcgaaacgccgcatcggcaagctcgaatatgcg
tccggcggcacgctttttctggacgagatcgaaagcatgccgctcgcgctgcaggtcaag
ctgctgcgcgtgctgcaggacggcgtactggagcggctcggttcgaaccagccgattcgc
gtggattgccgcgtgatcgcagccgccaagggcgacatggccgaacacgttgcggcgggc
acgttcaggcgcgacctgctgtaccgcctcaacgtcgtgacgatcgcgctgcctccgctc
gcagaccgtcgcgaggacatcgtgccgctattcgaacatttcgtcctcgaggcggccgtg
cgctaccagtgcgccgcgccggtgttgaccgaacgccagcgcgcccgcctcgaggagcgc
gattggcctggaaacgtgcgcgagctgcgcaatgcggccgagcggttcgtgctcggcatt
gcggacgcttccagcccgatcggtaccgcatcgacggcgcagccgggggccgcgtcgatg
ccgctgaaggagcgggtcgaacggttcgagcggacggtcattgccgacgcgctcgagcag
acgggcggagccgtcgcggcggcggccgacctgctggagatcggcaaggcgacgctttac
gagaagatcaaacgatacggcctcgccgagcgtggcgaggccggaaaagaggtgggctga

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