Trinickia caryophylli: U0034_12130
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Entry
U0034_12130 CDS
T09722
Symbol
mutM
Name
(GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
tcar
Trinickia caryophylli
Pathway
tcar03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
tcar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
U0034_12130 (mutM)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tcar03400
]
U0034_12130 (mutM)
Enzymes [BR:
tcar01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
U0034_12130 (mutM)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
U0034_12130 (mutM)
DNA repair and recombination proteins [BR:
tcar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
U0034_12130 (mutM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
C1_2
RNHCP
Auto_anti-p27
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
WQE10548
LinkDB
All DBs
Position
1:2694252..2695079
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AA seq
275 aa
AA seq
DB search
MPELPEVEVTRRGIEPYVRGRRVERVDVRTGALRWPVPPELPQTLALQKVHEVGRRGKYL
LFETDAGWFIVHLGMTGTLRVLPQESAPAPAKHDHIDWIFDDFLLRFRDPRRFGAVLWHP
RAAGEPEAHPLLAKLGVEPFSPPFTGELIHRRTRGRTASIKQALLAGDIVVGVGNIYASE
SLFRAGIRPTTAAGRLSPARCERLADAVRATLAAAIERGGSTLRDFVGSNGESGYFQLDC
FVYDRAGLPCRVCGTPVRQLVQGQRSTYFCPHCQR
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaactgccagaagttgaagttacgcgacgcggtatcgagccgtacgtccgcggc
cgccgggtcgagcgcgtcgacgtgcgcaccggcgcgctgcgctggcccgttccgcccgag
ctgccgcaaacccttgcactccagaaagtgcacgaggtgggccggcgcggcaagtatctg
ctgttcgagacggacgcgggctggttcatcgtccatctcgggatgacgggcacgctgcgg
gttctgccgcaggaaagcgcgccggcacccgccaagcacgatcacatcgactggatcttc
gacgatttcctgctgcgctttcgcgacccgcgccgtttcggcgccgtactctggcacccg
cgcgcggccggcgagccggaggctcatccgctgctggcgaagctcggtgtcgaaccgttt
tctccgcccttcacgggcgagctcatccatcgacgcacgcggggcagaacggcttcgatc
aaacaggcactgctcgcaggcgatatcgtcgttggcgtgggcaacatttatgcgtccgaa
agcctttttcgtgccggcattcgaccgacgaccgcggccggacggctgtcgcccgcgcgc
tgcgagcggctggccgatgccgtgcgcgcgacgcttgcggccgcgatcgagcgcggcggc
agcacgttgcgcgatttcgtcggcagcaacggcgagtccgggtactttcaactcgactgc
ttcgtgtacgatcgcgccggcctgccttgccgcgtttgcggcacacccgtccgccagctc
gtccagggccagcggtccacctatttctgcccgcactgccagcgctga
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