Trinickia caryophylli: U0034_12165 Help Entry U0034_12165       CDS       T09722                                  Name (GenBank) RNA polymerase factor sigma-54   KO K03092   RNA polymerase sigma-54 factor Organism tcar  Trinickia caryophylli Pathway tcar02020   Two-component system tcar02040   Flagellar assembly Brite KEGG Orthology (KO) [BR:tcar00001]  09130 Environmental Information Processing   09132 Signal transduction    02020 Two-component system     U0034_12165  09140 Cellular Processes   09142 Cell motility    02040 Flagellar assembly     U0034_12165  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:tcar03021]     U0034_12165 Transcription machinery [BR:tcar03021]  Prokaryotic type   Bacterial type    RNA polymerase     Sigma factors      U0034_12165 BRITE hierarchy Motif Pfam:  Sigma54_DBD Sigma54_CBD Sigma54_AID HTH_IclR HTH_38 HTH_23 HTH_Crp_2 Motif Other DBs NCBI-ProteinID:  WQE10555 LinkDB All DBs Position 1:complement(2700468..2701970) Genome browser AA seq 500 aa AA seqDB search MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVAMAVAQNPLLESEDEWIASPLRV AGDGSVIAQAPTSSAPEPMSGAAPAEGSRAEGAEPAGVDEYNGLSSSDNSDSTQWNLDDY GRSAAPSDDDDLPPLQIHESTTTLRDHLMAQLRVTQASPRDRALVTFLIESLDDDGYLTA TLDEVLADLPDELEVDLDELNAALALLHSFDPAGVGARSASECLKLQLLRLDNSPTRKLA LDIVANHLELLAARDFTRLKKQLKTTDDALREAHALIRSLEPFPGAAYGKAEADYVVPDI MVRKTAQGWLAELNPEVVPRLRINHLYANILRNNRGDPGSGSLRQQLQEARWLIKNIQQR FETILRVAQAIVERQKNFFVHGEIAMRPLVLREIADTLGLHESTVSRVTTGKYMLTPFGT LEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDSKTPLSDSRIAELLAEQGFVVARR TVAKYREALRIPAVNLRKSL NT seq 1503 nt NT seq  +upstreamnt  +downstreamnt atgaaagccagcctccaactccgcctatcgcagcatcttgcgctgacaccgcagcttcag cagtcgatccggctgctgcagctgtccacgctcgaacttcagcaggaagtcgcgatggct gtcgcgcaaaatccgctgctcgaaagcgaggacgaatggatcgcaagcccgctgcgcgtg gccggcgacggctccgtgatcgcccaggcgcccacgtcgtccgcccccgagccgatgagc ggggccgcgcccgcggaaggctcgcgcgccgaaggggcggagccggccggcgtcgacgaa tacaacggtctgtcgtcgtccgacaattcggattcgacgcaatggaacctcgacgactac ggccgaagcgccgcgccgtccgatgacgacgacctcccgcccctgcagatccacgaatcc acgacgacgctgcgcgaccacctgatggcccagttgcgcgtgacgcaggcgagcccgcgc gaccgcgcgctcgtaacgtttctgatcgaatcgctcgacgatgacggctacctcacggcc acgctcgacgaagtgctggccgacctgcccgacgagctcgaagtcgatctcgacgaactc aatgcggcgctcgcgctgctgcacagcttcgatccggccggtgtcggcgcccgctcggca tccgaatgcctgaagctgcagttgctgcggctcgacaactcccccacgcgcaagctcgcg ctcgacatcgtcgccaaccatctcgagcttttggccgcgcgcgatttcacgcggctgaaa aaacagctgaagaccaccgacgatgcgctgcgcgaagcgcatgcgctgatccgctcgctc gagccgtttccgggcgcggcctacggcaaggccgaagcggactacgtcgtgcctgacatc atggtcaggaagactgcccagggctggctggcggagctgaatccggaggtggtgccgcgg ctgcggatcaaccatctctacgcgaacatcctgcgcaacaaccgcggtgacccgggcagc ggctcgctgcgccagcaactgcaggaagcccgttggctcatcaagaacatccagcagcgt ttcgagacgatcctgcgcgtggcgcaggcgatcgtcgagcggcagaagaactttttcgtg cacggcgaaatcgccatgcgccccttggttttgcgggaaatagctgatacgctgggcttg cacgagtcgacggtctctcgcgtgaccaccggtaagtacatgctcaccccattcgggacg ctcgagttcaagtactttttcggttcgcacgtttccaccgacacggggggagcggcctcg tcgaccgccattcgcgcgctcatcaagcaactgataggagcagaagactctaaaacaccg ctttcggacagccgcatagccgaactgctggcggaacaagggttcgtggtggcgcgccgc acggttgccaaataccgcgaagctctcaggatcccggcagtgaatctgcgcaagtctcta tag

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