Trinickia caryophylli: U0034_12245
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Entry
U0034_12245 CDS
T09722
Name
(GenBank) efflux RND transporter permease subunit
KO
K07787
copper/silver efflux system protein
Organism
tcar
Trinickia caryophylli
Pathway
tcar02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
tcar00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
U0034_12245
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
tcar02000
]
U0034_12245
Transporters [BR:
tcar02000
]
Other transporters
Electrochemical potential-driven transporters [TC:
2
]
U0034_12245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ACR_tran
MMPL
SecD_SecF_C
DUF4131
Motif
Other DBs
NCBI-ProteinID:
WQE10569
LinkDB
All DBs
Position
1:complement(2719485..2722751)
Genome browser
AA seq
1088 aa
AA seq
DB search
MIARLIRWSIHNRLLVLLATVLVTAWGAYSLEQTPLDALPDLSDTQVIIKASYPGKAPQV
IEDQVTYPLTTTLLGVPGAKTIRAYSSFGDAFVYVLFDDKTDQYWARSRVLEYLNQVQSR
LPQGATVSLGPDATGVGWVYEYALVDRSGKHDLGQLRALNDWFLKFELKSVPDVAEVASI
GGMVRQYQVVLDPDRLRAYGITRSMVADALGKANQESGGSVVELAESEYMVRSSGYLRSL
DDFRHVVIRTNDAGTPVLLGDLARIQIGPDMRRGIAELNGEGEVAGGVIVMRSGKNALTT
IGAVKAKLAELKRSLPAGVEIVTTYDRSQLIERAVDNLKDKLIEEFIIVGLVCAVFLFHL
RSAFVAILSLPIGVLAAFIVMRYQGVNANLMSLGGIAIAIGAMVDAAIVMIENTHKHLEA
YEHEHPDTPMSTARRWTLVATSAAEVGPALFFSLLIITLSFIPVFSLEGQEGKLFSPLAF
TKTYTIAAAAGLSVTLVPVLMGYLIRGRIPPENANPINRVLIRLYKPLLELTLRRPWLAI
ALAGVVLVVTALPISRLGGEFLPPLDEGDLLYMPTALPGISAEKASELLQQTDRLIKTVP
EVATVFGKSGRADTATDPAPLEMFETTIQFKPRSQWRPGMTPEKLVDELDRTVKVPGLSN
VWVPPIRNRLDMLSTGIKTPVGVKISGPDIKQIDGIATQVEAVVKGVPGVTSALAERLNG
GRYIDVDIDRLAAARYGLSVADVQSVVSSAIGGENVGEVIAGRERFPISIRYPRETRDSL
ERLRQLPVVTDRGAQILLGDVARIAIADGPPMIRSESARLSGYVYVDIRNTDLSSAVQAM
QKAVAQQVKLPPGYSIAWSGQFEYLERAAAKLRTVIPVTLAVIFVLLFLTFNSAADALLL
MSTVPFALVGGFWLIWALGHAVSVATSVGFIALAGVAAEFGVVMLLYLKGALNKRLEAGE
PFTEALLLDAIREGAVQRVRPKAMTVAVVLAGLIPIMIGHGAGSEVMQRIAAPMVGGMVT
APLLSMFVIPAAWFVLQRRRAKQACDAVMSNAVRSGTKVPLRNQPSSDEPCDTRNGPAVI
AKERQNER
NT seq
3267 nt
NT seq
+upstream
nt +downstream
nt
atgatcgcgcgtctcatacgctggtccatccacaaccggttgctcgtgctgctcgcgacg
gtgctcgtcaccgcatggggtgcgtactcgctcgagcaaacgccgctcgatgccttgccg
gatctgtccgatacgcaggtcatcatcaaggcgtcgtacccgggcaaggcaccgcaggtc
atcgaggatcaggtcacatatccgctgaccacgacactgctcggcgtgccgggcgcgaag
accattcgcgcatactcgtcgttcggcgatgcattcgtctacgtgctgttcgacgacaaa
accgatcagtactgggcgcgctcgcgcgtgctggagtacctgaatcaggtgcaaagccgc
ctgccgcagggcgcaacggtttcactcggccccgatgcgacgggcgtcggctgggtgtac
gagtatgcgttggtcgacaggagcggcaagcacgacctcgggcagttgcgtgcgctcaac
gactggttcctcaagttcgagctgaagtcggtgcccgatgtcgccgaagtcgccagcatc
ggcgggatggtgcgtcaatatcaggtcgtgctcgacccggacaggctgcgcgcctatggc
atcacccgatcgatggtggccgatgcgctcggcaaggcgaatcaggagtccggcggttcg
gtcgtcgaactggccgaatcggagtacatggttcgctcgtccggctacctgcgctcgctc
gacgacttccgtcatgtcgtcatccgaacgaacgacgcaggcacgccggtgctgctgggc
gacctcgcgcgcatccagatcggccccgatatgcgccgcggcatcgcggaattgaatggc
gaaggcgaggtggccggtggcgtcatcgtcatgcgctcgggcaagaatgcgctgaccacc
atcggtgcggtgaaggcgaagctcgcggaattgaagcggtcactgccggctggtgtcgag
atcgtcacgacctacgaccgctcgcaactgatcgaacgcgcagtcgacaacctcaaagac
aaactcatcgaagagttcatcatcgtcgggctcgtctgcgccgtgttcctgttccatctg
cgcagcgcgttcgtcgccatcctgtcactgccgatcggtgtgctggctgcgttcatcgtc
atgcgttatcaaggggtgaacgcgaatctcatgtcgcttggcggcatcgcgatcgcgatc
ggcgcgatggtcgacgcggcgattgtcatgatcgaaaacacgcacaagcatctggaggcc
tatgagcatgagcatccggatacgccgatgtcgacggcgcgccgttggacgcttgtcgca
acctctgccgcggaagtcggcccggcgctgttcttctcgctgctcatcatcacgctctcg
ttcattcccgtcttctcgctcgaaggacaggaaggcaagctcttttcgccgctcgccttt
acgaagacctatacgatcgccgcggccgccggcctttccgtgacgctcgtaccggtgctg
atgggctatctcatccgtgggcgcattccgcccgaaaacgccaatcccatcaaccgcgtg
ctgatccgcctgtacaagccgcttctcgagctcacgctgcggcgcccatggctcgccatc
gccctggccggcgtggtcttggtggtcaccgcgcttccgatctcccggctcggaggtgag
ttcctgccgccgctcgacgagggcgacctgctgtatatgcccaccgccctgcccggtatt
tccgcggaaaaggcatccgaattgctgcagcagaccgaccggctcatcaagaccgtgccc
gaggtggcgaccgtattcggcaagtccggtcgcgccgataccgcaaccgatcccgcaccg
ctcgagatgttcgagacgacgatacagttcaagccgcgcagccagtggcgacccggcatg
acaccggagaaactcgtggacgaactggaccggaccgtcaaggtgccggggctgtcgaac
gtctgggtgccacctatccggaatcgcctcgacatgctctccaccggcatcaagacaccg
gtcggggtcaagatttcgggcccggacatcaagcagatcgacggcatcgcgacccaggtg
gaagccgtggtgaagggcgtgcctggcgtgacgtccgcactggccgagcgactgaatggg
ggccgatatatcgacgtcgacatcgaccggctcgccgccgcgcggtatggcctttcggtt
gcggacgtgcagtcggtcgtatcgtcggctatcggcggagagaacgtcggcgaggtgatt
gccgggcgggagcgctttcctatcagcatccgctatccgcgcgaaacaagggactcgctc
gagcggcttcggcaactgcccgtcgtcacggaccgtggcgcgcaaatcctgctcggcgac
gttgcacgcatcgcgattgccgacggcccaccgatgattcgcagcgaaagcgcgcggctc
tccggctatgtgtacgtcgatatccggaacacggacctgagctccgccgtacaggcgatg
caaaaagccgtagcgcagcaggtcaagctccctcctggctattcgatcgcgtggtccgga
caattcgaatatctcgagcgagcggcggcgaagcttcgaacggtcattccggtgacgctc
gccgtcatcttcgtgctgctcttcctgacgttcaactccgcagcggacgcgttgctgctg
atgtcgaccgtgccgtttgcgctcgttggcggattctggctcatttgggcgctggggcac
gcagtgtctgtcgcgacatcggtggggttcattgcgcttgccggcgtggccgccgaattc
ggcgtcgtcatgctgctttacctgaagggtgcgctgaacaagcggctggaggcaggagag
ccgttcaccgaggcattgctgctcgacgcgatccgtgaaggcgccgtgcagcgcgtacgg
cccaaggcaatgacggtcgccgtggtcctggccggcctgattcctatcatgatcgggcac
ggcgccggctcggaagtcatgcagcgtatcgcggcgcccatggtcggcggcatggtgacc
gcgccactgctctccatgttcgtcattcccgccgcctggttcgtgctgcagcgccgccgc
gcgaaacaggcttgcgatgccgtcatgtccaacgcggttcggtccggtacgaaagtgccg
ctgcggaatcaaccctcgagcgacgagccctgcgatactcggaacgggccagccgtgatt
gccaaggagcgtcaaaatgagcgatga
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