Trinickia caryophylli: U0034_12355
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Entry
U0034_12355 CDS
T09722
Name
(GenBank) ABC transporter substrate-binding protein
KO
K02055
putative spermidine/putrescine transport system substrate-binding protein
Organism
tcar
Trinickia caryophylli
Pathway
tcar02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
tcar00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
U0034_12355
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
tcar02000
]
U0034_12355
Transporters [BR:
tcar02000
]
ABC transporters, prokaryotic type
Mineral and organic ion transporters
Putative spermidine/putrescine transporter
U0034_12355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SBP_bac_8
SBP_bac_1
SBP_bac_6
SBP_bac_11
Motif
Other DBs
NCBI-ProteinID:
WQE10590
LinkDB
All DBs
Position
1:complement(2746033..2747067)
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AA seq
344 aa
AA seq
DB search
MKLKSLCPVAITLAFGYAPAFAAGEITFVSQGGAYQEAQTKAILDPAAKQLGIAIKQDSI
PDAWPQIKAQGTTGKPIWDVVDTPTSNCLRGGREGLLEKLDFSKMPNAAAVPEKYRTPYS
VAYEFYSTVIGYNKKTVKKVPQSWADFWNVKGFPGTRALRNDPQTVLEAALLADGVPRNK
LYPLDVDRAFRKLAQIKPDIAVWWTSGGQSAQLLHDGEVDMEMIWNGRASAVAKDNPDIA
FTYNDGILQNTQLCILKNAPNLANAVRFVDMAVSPDLQANLPTYIDYGPGNPAAYKTGKI
SAKRASELPSSPENANKQALMSEEWWASEAGVQAKARWLKFMQQ
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atgaaactgaagagcttgtgcccggtcgccataacactcgcgttcggttacgcgcccgcg
tttgccgccggcgaaataacgttcgtatcgcaaggcggggcgtatcaggaagcgcagacg
aaggcgattctcgacccggccgccaaacaactcggcatcgcaatcaagcaagacagcatt
cccgacgcatggccgcaaatcaaggctcaaggcacaacgggcaagccgatttgggatgtg
gtcgacacccctacgtcgaactgcctgcgcggggggcgcgaggggctgctcgagaagctc
gacttctcgaagatgccgaacgctgcggcggtccccgaaaagtaccgcaccccctactcg
gtcgcgtacgagttctactccacggtgatcggctacaacaagaagaccgtgaagaaggtt
ccgcaaagctgggcggacttctggaacgtaaagggcttcccgggcacgcgcgcgctgcgc
aacgatccgcagactgtactggaggccgcgctgctcgccgacggcgtgccgcgcaacaag
ctctatccgctcgacgtcgatcgtgcgttcagaaagctcgcgcaaataaagcctgacata
gccgtgtggtggacgtcgggcggccagtccgcgcagttgctgcacgacggcgaagtggat
atggaaatgatctggaacggtcgcgcgagcgcggtcgcaaaggacaatccggatatcgcg
ttcacctataacgacggcattcttcagaacacgcaactgtgcattctcaagaacgcaccg
aatctcgcaaacgccgtacggttcgtcgatatggcagtgtcgcccgatcttcaggcgaat
ttgcccacctatatcgactacgggccgggcaacccggccgcgtacaagaccgggaagatc
tcggcgaagcgcgcgagcgagttgcccagttcgcccgagaatgcaaacaagcaggctctg
atgtccgaggaatggtgggcgtccgaagcaggcgtccaggcgaaggcacgctggctcaag
ttcatgcagcagtaa
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