Trinickia caryophylli: U0034_14150
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Entry
U0034_14150 CDS
T09722
Name
(GenBank) extracellular solute-binding protein
KO
K02055
putative spermidine/putrescine transport system substrate-binding protein
Organism
tcar
Trinickia caryophylli
Pathway
tcar02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
tcar00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
U0034_14150
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
tcar02000
]
U0034_14150
Transporters [BR:
tcar02000
]
ABC transporters, prokaryotic type
Mineral and organic ion transporters
Putative spermidine/putrescine transporter
U0034_14150
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SBP_bac_8
SBP_bac_1
SBP_bac_6
Motif
Other DBs
NCBI-ProteinID:
WQE10915
LinkDB
All DBs
Position
1:3126511..3127674
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AA seq
387 aa
AA seq
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MKGKHFVHRAGRIAAALCFSLTAAASFAADPVSLNVVDVAGNLALTKAGFEAFKAKYPDL
VSNITYTNAPAPQLPGKIKAMQGAGRSDIDLVLTGTDALAAGIEQKLWMKLPEKMLGDAN
GKYAPGPKEMQKLAQGEGLEVTFMPAGPLVEYNPAKVPPAEVPKTPEQLLSWCKAHPGKF
IYARPANSGPGRTFLMGLPYILGDKDPQDPEKGWDKTWAFLKQLNECVPYYAGGTSAVMK
ELGEGTRDMTVTVTGWDINPRALGIVPAEFKVQPFDNMKWVNDAHYMVIPKGVPKEKVEV
LEKMMNFMLEPAQQAMTYDDGYFYPGPAIDGLTPSNAPEKSRVVLQKFGRPEYGGWLKKY
PNVQPLPADKMVQAFQKWDREIGSQKK
NT seq
1164 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggtaagcatttcgtgcatcgcgcgggccgcatcgcggcggcgctgtgcttttcg
ttgacggcggcggcgagcttcgcggccgaccccgtctcgctgaacgtcgtcgacgtagcg
ggcaacctcgcgttgaccaaggccggcttcgaagcattcaaggcgaagtatccggacctc
gtcagcaatatcacttatacgaatgcgccggcgccgcaactgccgggcaagatcaaggcg
atgcaaggggcgggccgctccgatatcgacctcgttctcacgggtaccgatgcgcttgcc
gccggcatcgagcaaaagctctggatgaaactgccggagaagatgctcggcgacgcgaac
ggcaaatacgcgccgggtccgaaggagatgcaaaagctcgcgcagggcgaaggcctcgaa
gtaacgttcatgccggctggcccgctcgtcgaatacaaccccgccaaggtgccgcccgcc
gaggtgccgaagacgcctgagcaactgctctcgtggtgcaaggcgcacccgggcaagttc
atctatgcgcgccccgccaactcgggcccgggccgcacgttcctgatgggcctgccttat
atcctcggcgacaaggacccgcaggacccggagaagggctgggacaagacgtgggccttc
ctcaaacagctcaacgaatgcgtgccttactacgccggcggcacgtcggccgtgatgaag
gaactcggcgaaggtacgcgtgacatgaccgtcaccgtgacgggctgggacatcaatccg
cgcgcgctcggcatcgtgcccgccgagttcaaggtgcaaccgttcgacaacatgaagtgg
gtcaacgatgcccactacatggtcattccgaagggggtgccgaaggagaaggtcgaagta
ctcgagaagatgatgaacttcatgctcgagcccgcgcaacaggcgatgacctacgacgac
ggctatttctatccgggcccggcgatcgatggcctcacgccctcgaacgcgcccgagaag
agtcgcgtggtgctgcagaaattcggtcggcccgagtacggcggttggctgaagaagtac
ccgaacgtgcagccgctgcccgccgacaagatggtccaggcgttccagaagtgggaccgc
gagatcggctcgcagaagaagtaa
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